Files in ddsjoberg/bstfun

Functions for the MSK Biostatistics Department

.Rbuildignore

.Rprofile

.covrignore

.github/.gitignore

.github/PULL_REQUEST_TEMPLATE.md

.github/workflows/R-CMD-check.yaml

.github/workflows/pkgdown.yaml

.github/workflows/pr-commands.yaml

.github/workflows/test-coverage.yaml

.gitignore

DESCRIPTION

LICENSE

LICENSE.md

NAMESPACE

NEWS.md R/add_cuminc_risktable.R R/add_inline_forest_plot.R R/add_sparkline.R R/add_splines.R R/add_variable_grouping.R R/as_forest_plot.R R/as_ggplot.R R/assign_timepoint.R R/auc.R R/bold_italicize_group_labels.R R/bstfun-package.R R/cite_r.R R/clean_mrn.R R/count_map.R R/count_na.R R/create_biostat_project.R R/data.R R/deprecated.R R/egfr.R R/fix_database_error.R R/followup_time.R R/get_mode.R R/ggcalibration.R R/here_data.R R/hpcc.R R/is_hot.R R/list_labels.R R/logistic_reg_adj_diff.R R/reexport.R R/rm_logs.R R/set_derived_variables.R R/style_tbl_compact.R R/tbl_likert.R R/theme_gtsummary_msk.R R/use_bst_file.R R/use_bst_rstudio_prefs.R R/use_varnames_as_labels.R R/utils-fix_database_error.R README.Rmd README.md

bstfun.Rproj

codecov.yml

codemeta.json

data-raw/DATASET.R data-raw/gt_doc_images.R data-raw/project_template.R

data/project_templates.rda

data/trial.rda

inst/WORDLIST

inst/project_templates/SASgeneral_template_files/010-data-setup.sas

inst/project_templates/SASgeneral_template_files/020-analysis.sas

inst/project_templates/SASgeneral_template_files/030-report1.sas

inst/project_templates/SASgeneral_template_files/_formats.sas

inst/project_templates/SASgeneral_template_files/_prep.sas

inst/project_templates/SASgeneral_template_files/readme.md inst/project_templates/analysis.Rmd

inst/project_templates/analysis.qmd

inst/project_templates/data_date.txt

inst/project_templates/default_rproj.Rproj

inst/project_templates/derived_variables.xlsx

inst/project_templates/doc_template.docx

inst/project_templates/european-urology.csl

inst/project_templates/gitignore.txt

inst/project_templates/hot_template_files/doc_template.docx

inst/project_templates/hot_template_files/hot_analysis.qmd

inst/project_templates/hot_template_files/hot_report.qmd

inst/project_templates/hot_template_files/hot_setup.qmd

inst/project_templates/leej22_template_files/01_data_setup.Rmd inst/project_templates/leej22_template_files/02_data_checks.Rmd inst/project_templates/leej22_template_files/03_analysis.Rmd inst/project_templates/leej22_template_files/04_report.Rmd inst/project_templates/leej22_template_files/write_directories.R inst/project_templates/lobaughs_template_files/010-data-setup.Rmd

inst/project_templates/lobaughs_template_files/010-data-setup.sas

inst/project_templates/lobaughs_template_files/020-analysis.Rmd

inst/project_templates/lobaughs_template_files/020-analysis.sas

inst/project_templates/lobaughs_template_files/030-report1.Rmd

inst/project_templates/lobaughs_template_files/030-report1.sas

inst/project_templates/lobaughs_template_files/_formats.sas

inst/project_templates/lobaughs_template_files/_prep.sas

inst/project_templates/lobaughs_template_files/readme.md inst/project_templates/readme.md

inst/project_templates/references.bib

inst/project_templates/report.Rmd

inst/project_templates/report.qmd

inst/project_templates/results_scripts_folders/analysis.Rmd inst/project_templates/results_scripts_folders/report.Rmd inst/project_templates/results_scripts_folders/results_scripts_folders.R inst/project_templates/results_scripts_folders/setup.Rmd

inst/project_templates/sap.docx

inst/project_templates/script_phi_private.R inst/project_templates/setup.Rmd

inst/project_templates/setup.qmd

inst/project_templates/whitingk_template_files/01_clean-data.R inst/project_templates/whitingk_template_files/02_analysis.Rmd inst/project_templates/whitingk_template_files/write_directories.R man/add_cuminc_risktable.Rd man/add_inline_forest_plot.Rd man/add_sparkline.Rd man/add_splines.Rd man/add_variable_grouping.Rd man/as_forest_plot.Rd man/as_ggplot.Rd man/assign_timepoint.Rd man/auc.Rd man/bold_italicize_group_labels.Rd man/bstfun-package.Rd man/cite_r.Rd man/clean_mrn.Rd man/count_map.Rd man/count_na.Rd man/create_project.Rd man/deprecated.Rd man/egfr.Rd

man/figures/add_inline_forest_plot_ex1.png

man/figures/add_sparkline_ex1.png

man/figures/add_variable_grouping_ex1.png

man/figures/bold_italicize_group_labels_ex1.png

man/figures/lifecycle-archived.svg

man/figures/lifecycle-defunct.svg

man/figures/lifecycle-deprecated.svg

man/figures/lifecycle-experimental.svg

man/figures/lifecycle-maturing.svg

man/figures/lifecycle-questioning.svg

man/figures/lifecycle-retired.svg

man/figures/lifecycle-soft-deprecated.svg

man/figures/lifecycle-stable.svg

man/figures/lifecycle-superseded.svg

man/figures/logistic_reg_adj_diff_ex1.png

man/figures/logistic_reg_adj_diff_ex2.png

man/figures/style_tbl_compact_ex1.png

man/figures/tbl_likert_ex1.png

man/fix_database_error.Rd man/followup_time.Rd man/get_mode.Rd man/ggcalibration.Rd man/here_data.Rd man/hpcc.Rd man/list_labels.Rd man/logistic_reg_adj_diff.Rd man/project_templates.Rd man/reexports.Rd man/rm_logs.Rd man/set_derived_variables.Rd man/style_tbl_compact.Rd man/tbl_likert.Rd man/theme_gtsummary_msk.Rd man/trial.Rd man/use_bst_rstudio_prefs.Rd man/use_file.Rd man/use_varnames_as_labels.Rd

pkgdown/_pkgdown.yml

tests/spelling.R tests/testthat.R tests/testthat/Rplots.pdf

tests/testthat/derived_variables_test.xlsx

tests/testthat/test-add_cuminc_risktable.R

tests/testthat/test-add_sparkline.R tests/testthat/test-add_splines.R tests/testthat/test-add_variable_grouping.R tests/testthat/test-as_forest_plot.R tests/testthat/test-auc.R tests/testthat/test-bold_italicize_group_labels.R tests/testthat/test-cite_r.R tests/testthat/test-clean_mrn.R tests/testthat/test-count_map.R tests/testthat/test-count_na.R tests/testthat/test-create_biostat_project.R tests/testthat/test-egfr.R tests/testthat/test-fix_database_error.R tests/testthat/test-followup_time.R tests/testthat/test-get_mode.R tests/testthat/test-ggcalibration.R tests/testthat/test-list_labels.R tests/testthat/test-logistic_reg_adj_diff.R tests/testthat/test-set_derived_variables.R tests/testthat/test-style_tbl_compact.R tests/testthat/test-tbl_likert.R tests/testthat/test-theme_gtsummary_msk.R tests/testthat/test-use_varnames_as_labels.R

ddsjoberg/bstfun documentation built on July 4, 2023, 10:59 a.m.