.Rbuildignore
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.gitignore
DESCRIPTION
NAMESPACE
R/reading_functions.R
R/util_functions.R
README.md
example_peak_calling.R
man/combine.experiments.Rd
man/combined.analysis.Rd
man/data.frame.to.peakC.Rd
man/hello.Rd
man/pairwise.jaccard.Rd
man/plot_C.Rd
man/readMatrix.Rd
man/readMultiColumnFile.Rd
man/readMultiple.Rd
man/readMultipleWig.Rd
man/readqWig.Rd
man/rem.Rd
man/running.Rd
man/single.analysis.Rd
peakC.Rproj
tutorial/data/Hba_cis.txt
tutorial/data/Hbb_cis.txt
tutorial/data/alpha-globin_ESC_1_cis.wig
tutorial/data/alpha-globin_FL_1_cis.wig.gz
tutorial/data/alpha-globin_FL_2_cis.wig.gz
tutorial/data/alpha-globin_FL_3_cis.wig.gz
tutorial/data/alpha-globin_forward_1_chr11_win_1_cis.wig.zip
tutorial/data/alpha-globin_mESC_1_cis.wig.gz
tutorial/data/alpha-globin_mESC_2_cis.wig.gz
tutorial/data/alpha-globin_mESC_3_cis.wig.gz
tutorial/data/peakC_tutorial_Oacyl_6_reps_mappedReads.txt/set2_viewpoint_1_replicate_1.txt.gz
tutorial/data/peakC_tutorial_Oacyl_6_reps_mappedReads.txt/set2_viewpoint_1_replicate_2.txt.gz
tutorial/data/peakC_tutorial_Oacyl_6_reps_mappedReads.txt/set2_viewpoint_1_replicate_3.txt.gz
tutorial/data/peakC_tutorial_Oacyl_6_reps_mappedReads.txt/set2_viewpoint_1_replicate_4.txt.gz
tutorial/data/peakC_tutorial_Oacyl_6_reps_mappedReads.txt/set2_viewpoint_1_replicate_5.txt.gz
tutorial/data/peakC_tutorial_Oacyl_6_reps_mappedReads.txt/set2_viewpoint_1_replicate_6.txt.gz
tutorial/library.bib
tutorial/peakC_tutorial.Rmd
tutorial/peakC_tutorial.html
tutorial/peakC_tutorial.pdf
tutorial/peakC_tutorial_conflict-20180412-115545.Rmd