Files in deWitLab/peakC

Perform peak calling for 4C/Capture-C experiments

.Rbuildignore

.Rproj.user/CD02ED0/cpp-definition-cache

.Rproj.user/CD02ED0/pcs/debug-breakpoints.pper

.Rproj.user/CD02ED0/pcs/files-pane.pper

.Rproj.user/CD02ED0/pcs/source-pane.pper

.Rproj.user/CD02ED0/pcs/windowlayoutstate.pper

.Rproj.user/CD02ED0/pcs/workbench-pane.pper

.Rproj.user/CD02ED0/persistent-state

.Rproj.user/CD02ED0/saved_source_markers

.Rproj.user/CD02ED0/sdb/prop/23C73958

.Rproj.user/CD02ED0/sdb/prop/2E63A419

.Rproj.user/CD02ED0/sdb/prop/32E011F9

.Rproj.user/CD02ED0/sdb/prop/68A9BA79

.Rproj.user/CD02ED0/sdb/prop/D9AC0466

.Rproj.user/CD02ED0/sdb/prop/DD5458E2

.Rproj.user/CD02ED0/sdb/prop/EBA575A7

.Rproj.user/CD02ED0/sdb/prop/F1C0BA22

.Rproj.user/CD02ED0/sdb/prop/F78FEF6A

.Rproj.user/CD02ED0/sdb/prop/F854CBB1

.Rproj.user/CD02ED0/sdb/prop/INDEX

.Rproj.user/CD02ED0/sdb/s-2ED88DA7/493EA3DC

.Rproj.user/CD02ED0/sdb/s-2ED88DA7/lock_file

.gitignore

DESCRIPTION

NAMESPACE

R/reading_functions.R R/util_functions.R README.md example_peak_calling.R man/combine.experiments.Rd man/combined.analysis.Rd man/data.frame.to.peakC.Rd man/hello.Rd man/pairwise.jaccard.Rd man/plot_C.Rd man/readMatrix.Rd man/readMultiColumnFile.Rd man/readMultiple.Rd man/readMultipleWig.Rd man/readqWig.Rd man/rem.Rd man/running.Rd man/single.analysis.Rd

peakC.Rproj

tutorial/data/Hba_cis.txt

tutorial/data/Hbb_cis.txt

tutorial/data/alpha-globin_ESC_1_cis.wig

tutorial/data/alpha-globin_FL_1_cis.wig.gz

tutorial/data/alpha-globin_FL_2_cis.wig.gz

tutorial/data/alpha-globin_FL_3_cis.wig.gz

tutorial/data/alpha-globin_forward_1_chr11_win_1_cis.wig.zip

tutorial/data/alpha-globin_mESC_1_cis.wig.gz

tutorial/data/alpha-globin_mESC_2_cis.wig.gz

tutorial/data/alpha-globin_mESC_3_cis.wig.gz

tutorial/data/peakC_tutorial_Oacyl_6_reps_mappedReads.txt/set2_viewpoint_1_replicate_1.txt.gz

tutorial/data/peakC_tutorial_Oacyl_6_reps_mappedReads.txt/set2_viewpoint_1_replicate_2.txt.gz

tutorial/data/peakC_tutorial_Oacyl_6_reps_mappedReads.txt/set2_viewpoint_1_replicate_3.txt.gz

tutorial/data/peakC_tutorial_Oacyl_6_reps_mappedReads.txt/set2_viewpoint_1_replicate_4.txt.gz

tutorial/data/peakC_tutorial_Oacyl_6_reps_mappedReads.txt/set2_viewpoint_1_replicate_5.txt.gz

tutorial/data/peakC_tutorial_Oacyl_6_reps_mappedReads.txt/set2_viewpoint_1_replicate_6.txt.gz

tutorial/library.bib

tutorial/peakC_tutorial.Rmd

tutorial/peakC_tutorial.html

tutorial/peakC_tutorial.pdf tutorial/peakC_tutorial_conflict-20180412-115545.Rmd

deWitLab/peakC documentation built on May 28, 2019, 7:53 p.m.