readMatrix: Quickly read and normalize a matrix formatted file

In deWitLab/peakC: Perform peak calling for 4C/Capture-C experiments

Description

Wrapper function for reading files that are formatted as wig files. The data is also normalized to 1 million sequencing reads.

Usage

readMatrix(file, window, vp.pos, normalize = T)

Arguments

file	path to a two column file
window	genomic window around the viewpoint to read in
vp.pos	postion of the viewpoint in the genome

Value

a matrix with two columns, position and score

deWitLab/peakC documentation built on May 28, 2019, 7:53 p.m.