readqWig: Quickly read and normalize a wig formatted file

In deWitLab/peakC: Perform peak calling for 4C/Capture-C experiments

Description

Wrapper function for reading files that are formatted as wig files. The data is also normalized to 1 million sequencing reads.

Usage

readqWig(file, window, vp.pos)

Arguments

file	path to a wiggle file
window	genomic window around the viewpoint to read in
vp.pos	postion of the viewpoint in the genome

Value

a matrix with two columns, position and score

Examples

data <- readqWig(file="alpha.wig", window = 700e3, vp.pos = 32224333 )

deWitLab/peakC documentation built on May 28, 2019, 7:53 p.m.