knitr::opts_chunk$set( collapse = TRUE, comment = "#>", fig.path = "README-" )
tcgsaseq
tcgsaseq
capabilities and features have been incorporated into the Bioconductor
package dearseq
.
tcgsaseq
is the legacy companion package of the 2017 Agniel & Hejblum Biostatistics article.
It has been archived on CRAN and will not be further developped or extended.
If you are interested in using tcgsaseq, you should probably rather look into the newer and more comprehensive dearseq
package.
tcgsaseq
is a package for analyzing RNA-seq data. The 2 main functions of the package are varcompseq
and tcgsa_seq
:
varcompseq
. tcgsa_seq
. The method implemented in this package is detailed in the following article:
Agniel D & Hejblum BP (2017). Variance component score test for time-course gene set analysis of longitudinal RNA-seq data, 2017, Biostatistics, 18(4):589-604. arXiv:1605.02351 DOI: 10.1093/biostatistics/kxx005
The easiest way to get tcgsaseq
is to install it from GitHub:
#install.packages("devtools") devtools::install_github("denisagniel/tcgsaseq")
-- Denis Agniel and Boris Hejblum
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