Files in denisagniel/tcgsaseq
Time-Course Gene Set Analysis for RNA-Seq Data
.Rbuildignore
.github/.gitignore
.github/workflows/R-CMD-check.yaml
.gitignore
CRAN-RELEASE
DESCRIPTION
LICENSE
NAMESPACE
NEWS.md
R/.DS_Store
R/PBT_gmt.R
R/TcGSAseq-package.R
R/TcGSAseq_internal.R
R/baduel.R
R/compute_nb_sim.R
R/compute_nonlin_gene_sim.R
R/compute_nonlin_sim.R
R/compute_sim_voomlike.R
R/compute_sim_voomlike_genewise.R
R/data_sim_voomlike.R
R/deseq_fn.R
R/dsFDR.R
R/perm_pe.R
R/qAbundanceDist.R
R/sp_weights.R
R/tcgsa_seq.R
R/varcompseq.R
R/vc_score.R
R/vc_score_h.R
R/vc_score_h_perm.R
R/vc_score_perm.R
R/vc_test_asym.R
R/vc_test_perm.R
R/voom_weights.R
README.Rmd
README.md
ReproducibleForBiostat.R
data/PBT_gmt.RData
data/baduel_5gs.RData
data/qAbundanceDist.RData
inst/CITATION
man/.DS_Store
man/PBT_gmt.Rd
man/baduel_5gs.Rd
man/compute_sim_voomlike.Rd
man/compute_sim_voomlike_genewise.Rd
man/data_sim_voomlike.Rd
man/deseq_fn.Rd
man/dsFDR.Rd
man/figures/lifecycle-deprecated.svg
man/figures/lifecycle-soft-deprecated.svg
man/grapes-pow-grapes.Rd
man/nb_sim_fn.Rd
man/nonlin_sim_fn.Rd
man/perm_pe.Rd
man/qAbundanceDist.Rd
man/sp_weights.Rd
man/tcgsa_seq.Rd
man/tcgsaseq.Rd
man/varcompseq.Rd
man/vc_score.Rd
man/vc_score_h.Rd
man/vc_score_h_perm.Rd
man/vc_score_perm.Rd
man/vc_test_asym.Rd
man/vc_test_perm.Rd
man/voom_weights.Rd
tcgsaseq.Rproj
tests/testthat.R
tests/testthat/test_tcgsa_seq.R
tests/testthat/test_varseq.R
vignettes/varseq_userguide.Rmd
