checkPrimer: checkPrimer

In dianalow/SPLINTER: Splice Interpreter of Transcripts

checkPrimer

Description

checkPrimer

Usage

checkPrimer(pp, genome, roi = NULL)

Arguments

pp	data.frame defining primers, or output of callPrimer3. minimal columns = PRIMER_LEFT_SEQUENCE,PRIMER_RIGHT_SEQUENCE
genome	BSgenome object
roi	makeROI object

Value

list of GRanges with primer locations

Author(s)

Diana Low

Examples

# create a primer pair
roi
primer_pair <- data.frame(PRIMER_LEFT_SEQUENCE="agctcttgaaattggagctgac",
                          PRIMER_RIGHT_SEQUENCE="cttagaaagaacaggaaatcc",
                          stringsAsFactors=FALSE)

dianalow/SPLINTER documentation built on March 28, 2024, 2:07 p.m.