findTX: findTX
In dianalow/SPLINTER: Splice Interpreter of Transcripts
View source: R/main_splinter.R
findTX R Documentation
findTX
Description
Given an ENSEMBL id, find all transcripts that matches id
Usage
findTX(id, db, tx, valid = FALSE, verbose = FALSE)
Arguments
id
character. transcript identification (currently ENSEMBL gene names)
db
TxDb object
tx
GRangesList
valid
logical. check if in multiples of 3 [TRUE] for CDS translation.
verbose
logical. turn messages on/off.
Value
GRangesList
Author(s)
Diana Low
Examples
valid_cds <-findTX(id=splice_data$data[2,]$ID,tx=thecds,db=txdb,valid=FALSE)
dianalow/SPLINTER documentation built on March 28, 2024, 2:07 p.m.
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View source: R/main_splinter.R
| findTX | R Documentation |
findTX
Description
Given an ENSEMBL id, find all transcripts that matches id
Usage
findTX(id, db, tx, valid = FALSE, verbose = FALSE)
Arguments
id |
character. transcript identification (currently ENSEMBL gene names) |
db |
TxDb object |
tx |
GRangesList |
valid |
logical. check if in multiples of 3 [TRUE] for CDS translation. |
verbose |
logical. turn messages on/off. |
Value
GRangesList
Author(s)
Diana Low
Examples
valid_cds <-findTX(id=splice_data$data[2,]$ID,tx=thecds,db=txdb,valid=FALSE)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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