.Rbuildignore
.gitignore
DESCRIPTION
NAMESPACE
R/data.R
R/gams_fxns_generalized.R
R/pipeline.R
R/trends.R
R/utils-pipe.R
analysis/demo_fxns.R
analysis/from_stories/bbs_100_sites.Rds
analysis/from_stories/gam_fxns/fd_fxns.R
analysis/from_stories/gam_fxns/save_rat_data.R
analysis/from_stories/gam_fxns/sunrise_fxns.R
analysis/from_stories/gam_fxns/wrapper_fxns.R
analysis/from_stories/results/both_change_5.csv
analysis/from_stories/results/both_change_5_100bbs.csv
analysis/from_stories/results/both_ichange_summary_5.csv
analysis/from_stories/results/both_ichange_summary_5_100bbs.csv
analysis/from_stories/results/both_ichange_ts_summary_5.csv
analysis/from_stories/results/both_ichange_ts_summary_5_100bbs.csv
analysis/from_stories/results/both_summary_5.csv
analysis/from_stories/results/both_summary_5_100bbs.csv
analysis/from_stories/results/joint_samples_5.csv
analysis/from_stories/results/joint_samples_5_100bbs.csv
analysis/from_stories/results/ts_w_rescaled_e.csv
analysis/from_stories/results/ts_w_rescaled_e_100bbs.csv
analysis/from_stories/run_sr.R
analysis/from_stories/run_sr_many.R
analysis/from_stories/simple_results.Rmd
analysis/from_stories/simple_results.md
analysis/from_stories/simple_results_files/figure-gfm/unnamed-chunk-3-1.png
analysis/from_stories/simple_results_files/figure-gfm/unnamed-chunk-3-2.png
analysis/from_stories/simple_results_files/figure-gfm/unnamed-chunk-3-3.png
analysis/from_stories/simple_results_files/figure-gfm/unnamed-chunk-3-4.png
analysis/from_stories/simple_results_files/figure-gfm/unnamed-chunk-4-1.png
analysis/from_stories/simple_results_files/figure-gfm/unnamed-chunk-4-2.png
analysis/from_stories/simple_results_files/figure-gfm/unnamed-chunk-5-1.png
analysis/from_stories/simple_results_files/figure-gfm/unnamed-chunk-6-1.png
analysis/from_stories/simple_results_files/figure-gfm/unnamed-chunk-6-2.png
analysis/from_stories/sr_plots.Rmd
analysis/from_stories/sr_plots_many.Rmd
analysis/from_stories/sr_plots_many.md
analysis/from_stories/sr_plots_many_files/figure-gfm/unnamed-chunk-2-1.png
analysis/from_stories/sr_plots_many_files/figure-gfm/unnamed-chunk-3-1.png
analysis/from_stories/sr_plots_many_files/figure-gfm/unnamed-chunk-5-1.png
analysis/from_stories/sr_plots_many_files/figure-gfm/unnamed-chunk-5-2.png
analysis/from_stories/sr_plots_many_files/figure-gfm/unnamed-chunk-6-1.png
analysis/from_stories/sr_plots_many_files/figure-gfm/unnamed-chunk-6-2.png
analysis/from_stories/sr_plots_many_files/figure-gfm/unnamed-chunk-8-1.png
analysis/from_stories/sr_plots_many_files/figure-gfm/unnamed-chunk-8-2.png
analysis/from_stories/sunrise.Rmd
analysis/from_stories/working_datasets.csv
analysis/gam_on_isd.Rmd
analysis/gam_on_isd.md
analysis/gam_on_isd_files/figure-gfm/isd-1.png
analysis/gam_on_isd_files/figure-gfm/isd-2.png
analysis/gam_on_isd_files/figure-gfm/isd-3.png
analysis/gam_on_isd_files/figure-gfm/state variables-1.png
analysis/gam_on_isd_files/figure-gfm/unnamed-chunk-1-1.png
analysis/gam_on_isd_files/figure-gfm/unnamed-chunk-1-2.png
analysis/gam_on_isd_files/figure-gfm/unnamed-chunk-1-3.png
analysis/gam_on_isd_files/figure-gfm/unnamed-chunk-1-4.png
analysis/gam_on_isd_files/figure-gfm/unnamed-chunk-1-5.png
analysis/gam_on_isd_files/figure-gfm/unnamed-chunk-1-6.png
analysis/gam_on_isd_files/figure-gfm/unnamed-chunk-2-1.png
analysis/gam_on_isd_files/figure-gfm/unnamed-chunk-2-2.png
analysis/gam_on_isd_files/figure-gfm/unnamed-chunk-3-1.png
analysis/gam_on_isd_files/figure-gfm/unnamed-chunk-3-2.png
analysis/gam_on_isd_files/figure-gfm/unnamed-chunk-3-3.png
analysis/gam_on_isd_files/figure-gfm/unnamed-chunk-3-4.png
analysis/gam_on_isd_files/figure-gfm/unnamed-chunk-3-5.png
analysis/gam_on_isd_files/figure-gfm/unnamed-chunk-3-6.png
analysis/gam_on_isd_overlap.Rmd
analysis/gam_on_isd_overlap.md
analysis/gam_on_isd_overlap_files/figure-gfm/isd-1.png
analysis/gam_on_isd_overlap_files/figure-gfm/isd-2.png
analysis/gam_on_isd_overlap_files/figure-gfm/isd-3.png
analysis/gam_on_isd_overlap_files/figure-gfm/unnamed-chunk-1-1.png
analysis/gam_on_isd_overlap_files/figure-gfm/unnamed-chunk-1-2.png
analysis/gam_on_isd_overlap_files/figure-gfm/unnamed-chunk-1-3.png
analysis/gam_on_isd_overlap_files/figure-gfm/unnamed-chunk-1-4.png
analysis/gam_on_isd_overlap_files/figure-gfm/unnamed-chunk-1-5.png
analysis/gam_on_isd_overlap_files/figure-gfm/unnamed-chunk-1-6.png
analysis/gam_on_isd_overlap_files/figure-gfm/unnamed-chunk-2-1.png
analysis/gam_on_isd_overlap_files/figure-gfm/unnamed-chunk-2-2.png
analysis/gam_on_isd_overlap_files/figure-gfm/unnamed-chunk-2-3.png
analysis/gam_on_isd_overlap_files/figure-gfm/unnamed-chunk-2-4.png
analysis/gam_on_isd_overlap_portal.Rmd
analysis/gam_on_isd_overlap_portal.md
analysis/gam_on_isd_overlap_portal_files/figure-gfm/isd-1.png
analysis/gam_on_isd_overlap_portal_files/figure-gfm/isd-2.png
analysis/gam_on_isd_overlap_portal_files/figure-gfm/isd-3.png
analysis/gam_on_isd_overlap_portal_files/figure-gfm/unnamed-chunk-1-1.png
analysis/gam_on_isd_overlap_portal_files/figure-gfm/unnamed-chunk-1-2.png
analysis/gam_on_isd_overlap_portal_files/figure-gfm/unnamed-chunk-1-3.png
analysis/gam_on_isd_overlap_portal_files/figure-gfm/unnamed-chunk-1-4.png
analysis/gam_on_isd_overlap_portal_files/figure-gfm/unnamed-chunk-1-5.png
analysis/gam_on_isd_overlap_portal_files/figure-gfm/unnamed-chunk-1-6.png
analysis/gam_on_isd_overlap_portal_files/figure-gfm/unnamed-chunk-2-1.png
analysis/gam_on_isd_overlap_portal_files/figure-gfm/unnamed-chunk-2-2.png
analysis/gam_on_isd_overlap_portal_files/figure-gfm/unnamed-chunk-2-3.png
analysis/gam_on_isd_overlap_portal_files/figure-gfm/unnamed-chunk-2-4.png
analysis/gam_on_isd_overlap_portal_files/figure-gfm/unnamed-chunk-2-5.png
analysis/gam_on_isd_overlap_portal_files/figure-gfm/unnamed-chunk-2-6.png
analysis/isd.Rmd
analysis/isd.md
analysis/isd_files/figure-gfm/isd-1.png
analysis/isd_files/figure-gfm/isd-2.png
analysis/isd_files/figure-gfm/isd-3.png
analysis/isd_files/figure-gfm/just e portal-1.png
analysis/isd_files/figure-gfm/shortcut to net change-1.png
analysis/isd_files/figure-gfm/state variables-1.png
analysis/isd_files/figure-gfm/unnamed-chunk-1-1.png
analysis/isd_files/figure-gfm/unnamed-chunk-1-2.png
analysis/isd_files/figure-gfm/unnamed-chunk-1-3.png
analysis/isd_files/figure-gfm/unnamed-chunk-2-1.png
analysis/isd_files/figure-gfm/unnamed-chunk-2-2.png
analysis/isd_files/figure-gfm/unnamed-chunk-4-1.png
analysis/writing/Pilot manuscript.docx
analysis/writing/Presentation2.pptx
analysis/writing/energy.docx
analysis/writing/size_structure.docx
analysis/writing/wet_structure.docx
analysis/writing/wet_things.docx
analysis/writing/writing.docx
bbstrends.Rproj
ideawork/BioTIME_notes.md
ideawork/Question_scoping.md
ideawork/Tradeoffs_notes.md
man/get_all_species_ts.Rd
man/get_mean_e.Rd
man/get_species_ts.Rd
man/get_sv_ts.Rd
man/linear_trend.Rd
man/linear_trend_populations.Rd
man/pipe.Rd