read_scanBam: Read scanBam ouput list object.
In dieterich-lab/CircTest: Test circRNA dependence on host genes
Description
Read scanBam ouput list object.
Usage
1
read_scanBam(scanBam_result, strand = strands, splicedOnly = TRUE)
Arguments
scanBam_result
the result list object generated by Rsamtools::scanBam function
strand
a vector of strand information, need to be the same length as the "which" input option of sanBam (the number of circRNA subjected to host gene counting).
CircTest needs this information to determine which strand of the reads should be counted.
splicedOnly
Only count reads that are spliced at the circRNA junction. Default to be TRUE.
dieterich-lab/CircTest documentation built on May 15, 2019, 8:29 a.m.
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Description
Read scanBam ouput list object.
Usage
1 | read_scanBam(scanBam_result, strand = strands, splicedOnly = TRUE)
|
Arguments
scanBam_result |
the result list object generated by Rsamtools::scanBam function |
strand |
a vector of strand information, need to be the same length as the "which" input option of sanBam (the number of circRNA subjected to host gene counting). CircTest needs this information to determine which strand of the reads should be counted. |
splicedOnly |
Only count reads that are spliced at the circRNA junction. Default to be TRUE. |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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