tissueSiteDetailGTExv7: Tissue name and tissue id mapping of GTEx V7.

In dingruofan/xQTLbiolinks: An R Package for Integrative Analysis of Quantitative Trait Locus Data of 'xQTL'

Tissue name and tissue id mapping of GTEx V7.

Description

A dataset containing the 53 tissues' name and corresponding ID of GTEx V7.

Format

A data frame with 53 rows and 2 variables:

tissueSiteDetail

character string, tissue name

tissueSiteDetailId

character string, tissue id removding special character

tissueSite

character string, whole tissue name

colorHex

character string, color of the tissue in GTEx

Compared with GTEx v8

Tissue name	GTEx V8	GTEx V7
Adipose - Subcutaneous	√	√
Adipose - Visceral (Omentum)	√	√
Adrenal Gland	√	√
Artery - Aorta	√	√
Artery - Coronary	√	√
Artery - Tibial	√	√
Bladder	√	√
Brain - Amygdala	√	√
Brain - Anterior cingulate cortex (BA24)	√	√
Brain - Caudate (basal ganglia)	√	√
Brain - Cerebellar Hemisphere	√	√
Brain - Cerebellum	√	√
Brain - Cortex	√	√
Brain - Frontal Cortex (BA9)	√	√
Brain - Hippocampus	√	√
Brain - Hypothalamus	√	√
Brain - Nucleus accumbens (basal ganglia)	√	√
Brain - Putamen (basal ganglia)	√	√
Brain - Spinal cord (cervical c-1)	√	√
Brain - Substantia nigra	√	√
Breast - Mammary Tissue	√	√
Cells - Cultured fibroblasts	√	x
Cells - EBV-transformed lymphocytes	√	√
Cells - Transformed fibroblasts	x	√
Cervix - Ectocervix	√	√
Cervix - Endocervix	√	√
Colon - Sigmoid	√	√
Colon - Transverse	√	√
Esophagus - Gastroesophageal Junction	√	√
Esophagus - Mucosa	√	√
Esophagus - Muscularis	√	√
Fallopian Tube	√	√
Heart - Atrial Appendage	√	√
Heart - Left Ventricle	√	√
Kidney - Cortex	√	√
Kidney - Medulla	√	x
Liver	√	√
Lung	√	√
Minor Salivary Gland	√	√
Muscle - Skeletal	√	√
Nerve - Tibial	√	√
Ovary	√	√
Pancreas	√	√
Pituitary	√	√
Prostate	√	√
Skin - Not Sun Exposed (Suprapubic)	√	√
Skin - Sun Exposed (Lower leg)	√	√
Small Intestine - Terminal Ileum	√	√
Spleen	√	√
Stomach	√	√
Testis	√	√
Thyroid	√	√
Uterus	√	√
Vagina	√	√
Whole Blood	√	√

Source

https://gtexportal.org/home/

dingruofan/xQTLbiolinks documentation built on Feb. 12, 2025, 4:57 a.m.