xQTLdownload_hqtl: Download summary statistics data of H3K4me1 and H3K27ac...

In dingruofan/xQTLbiolinks: An R Package for Integrative Analysis of Quantitative Trait Locus Data of 'xQTL'

Download summary statistics data of H3K4me1 and H3K27ac histone QTL (hQTL) using a specified location

Description

Download summary statistics data of H3K4me1 and H3K27ac histone QTL (hQTL) using a specified location

Usage

xQTLdownload_hqtl(
  phenotype_id = "9:99773935-99776816",
  histone_type = "H3K27AC",
  cell_type = "monocyte",
  hqtlmeta = NULL
)

Arguments

phenotype_id	phenotype_id that formatted with genome location, like: 9-99773935-99776816, can be obtained using xQTLdownload_hqtlmeta
histone_type	(string) One of the histone types: "H3K27AC" or "H3K4ME1".
cell_type	(string) One of the cell types: "monocyte", "neutrophil" or "T cell".
hqtlmeta	A data.table object obtained via xQTLdownload_hqtlmeta.

Value

A data.table object

Examples

 hQTL_dt <- xQTLdownload_hqtl(phenotype_id="10:10458128-10465096",
                              histone_type="H3K4ME1", cell_type="T cell")

dingruofan/xQTLbiolinks documentation built on Feb. 12, 2025, 4:57 a.m.