xQTLdownload_sqtlExp: Download normalized PSI value of intron for a sQTL pair

In dingruofan/xQTLbiolinks: An R Package for Integrative Analysis of Quantitative Trait Locus Data of 'xQTL'

Download normalized PSI value of intron for a sQTL pair

Description

Download normalized PSI value of intron for a sQTL pair

Usage

xQTLdownload_sqtlExp(
  variantName = "",
  phenotypeId = "",
  variantType = "auto",
  tissueSiteDetail = ""
)

Arguments

variantName	(character) name of variant, dbsnp ID and variant id is supported, eg. "rs138420351" and "chr17_7796745_C_T_b38".
phenotypeId	A character string. Format like: "chr1:497299:498399:clu_54863:ENSG00000239906.1"
variantType	(character) options: "auto", "snpId" or "variantId". Default: "auto".
tissueSiteDetail	(character) details of tissues in GTEx can be listed using tissueSiteDetailGTExv8 or tissueSiteDetailGTExv7

Value

A data.table object.

Examples

# Download sQTL expression in different tissues:
xQTLdownload_sqtlExp(variantName="rs1450891501",
                     phenotypeId="chr1:497299:498399:clu_54863:ENSG00000239906.1",
                     tissueSiteDetail="Lung")

# Dowload sQTL expression using variant ID.
xQTLdownload_sqtlExp(variantName="chr1_14677_G_A_b38",
                     phenotypeId="chr1:15947:16607:clu_40980:ENSG00000227232.5",
                     tissueSiteDetail="Whole Blood")

dingruofan/xQTLbiolinks documentation built on Feb. 12, 2025, 4:57 a.m.