xQTLdownload_sgene: Download details of sGenes (sQTL Genes) for a specified gene...

In dingruofan/xQTLbiolinks: An R Package for Integrative Analysis of Quantitative Trait Locus Data of 'xQTL'

Download details of sGenes (sQTL Genes) for a specified gene or a tissue.

Description

sGenes are genes that have at least one significant sQTL acting upon them. Results may be filtered by tissue.

Usage

xQTLdownload_sgene(
  tissueSiteDetail = "",
  gene = "",
  geneType = "auto",
  recordPerChunk = 2000
)

Arguments

tissueSiteDetail	(character) details of tissues in GTEx can be listed using tissueSiteDetailGTExv8 or tissueSiteDetailGTExv7
gene	(character) gene symbol or gencode id (versioned or unversioned are both supported). Can be null.
geneType	(character) options: "auto","geneSymbol" or "gencodeId". Default: "auto".
recordPerChunk	(integer) number of records fetched per request (default: 2000).

Value

A data.table object.

Examples

sGeneInfo <- xQTLdownload_sgene(tissueSiteDetail="Liver")
sGeneInfo <- xQTLdownload_sgene(tissueSiteDetail="Liver", gene="DDX11" )

dingruofan/xQTLbiolinks documentation built on Feb. 12, 2025, 4:57 a.m.