This function modifies the taxa names in the
@[email protected] slot
epd.entity.df-class objects. More specifically, this
function compares the taxa name with the taxonomy of the EPD
to use the accepted names. If these changes result in duplicated columns
of the same taxa their values are unified by summing them.
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epd.entity.df Object of class
data.frame Data frame with the taxonomy
from the EPD as from the
epd.entity.df-class object with new taxa names.
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## Not run: epd.connection <- connect_to_epd(host="localhost", database="epd", user="epdr", password="epdrpw") epd.1 <- get_entity(1, epd.connection) epd.1 <- entity_to_matrices(epd.1) epd.1@commdf@taxanames colnames(epd.1@commdf@counts) epd.1.acc <- taxa_to_acceptedtaxa(epd.1, get_taxonomy_epd(epd.connection)) epd.1.acc@commdf@taxanames colnames(epd.1.acc@commdf@counts) ## End(Not run)
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