getFitModel-methods: Extract fit data from 'Rnits' object

In dipenps/rnits: R Normalization and Inference of Time Series data

Extract fit data from Rnits object

Description

Retrieve model fit data from Rnits object after fit has been run.

Usage

getFitModel(object)

## S4 method for signature 'Rnits'
getFitModel(object)

Arguments

object

Rnits

Details

Contains Ratio statistic, p-value and cluster ID data

Value

A data frame containing the model fit results for all genes

Examples

# load pre-compiled expressionSet object for Ronen and Botstein yeast  chemostat data
data(yeastchemostat)
rnitsobj = build.Rnits(yeastchemostat, logscale = TRUE, normmethod = 'Between')
## Not run: 
# Fit model using gene-level summarization
rnitsobj <- fit(rnitsobj, gene.level = TRUE, clusterallsamples = FALSE)

# P-values, ratio statistics and cluster ID's can be retrieved for all genes together
fitdata <- getFitModel(rnitsobj)

## End(Not run)

dipenps/rnits documentation built on March 18, 2023, 7:30 p.m.