getLR-methods: Get log-ratios

In dipenps/rnits: R Normalization and Inference of Time Series data

Get log-ratios

Description

Extract normalized log-ratios from Rnits object

Usage

getLR(object, impute = FALSE)

## S4 method for signature 'Rnits'
getLR(object, impute = FALSE)

Arguments

object	Rnits object
impute	If TRUE, perform K-NN imputation to fill missing values

Value

A matrix of normalized log-ratios.

Examples

# load pre-compiled expressionSet object for Ronen and Botstein yeast  chemostat data
data(yeastchemostat)
rnitsobj = build.Rnits(yeastchemostat, logscale = TRUE, normmethod = 'Between')
## Not run: 
# Fit model using gene-level summarization
rnitsobj <- fit(rnitsobj, gene.level = TRUE, clusterallsamples = FALSE)

# Get logratios
lr <- getLR(rnitsobj)

## End(Not run)

dipenps/rnits documentation built on March 18, 2023, 7:30 p.m.