timeAlign-methods: Curve registration of time series curves

In dipenps/rnits: R Normalization and Inference of Time Series data

Curve registration of time series curves

Description

Align multiple time series to the average seris

Usage

timeAlign(object, iterMax = 5, seed = 123, null.frac = 0.75,
  anchor = NULL, rerun = FALSE, plot = FALSE)

## S4 method for signature 'Rnits'
timeAlign(object, iterMax = 5, seed = 123,
  null.frac = 0.75, anchor = NULL, rerun = FALSE, plot = FALSE)

Arguments

object	rnits object
iterMax	Maximum iterations to be performed
seed	Random seed
null.frac	Fraction of genes that are considered as null
anchor	Sample to be considerded as base for aligning time series. If not provided, the average is used
rerun	If TRUE, re-align previously aligned data
plot	If TRUE, plot results

Examples

# load pre-compiled expressionSet object for Ronen and Botstein yeast  chemostat data
data(yeastchemostat)
rnitsobj = build.Rnits(yeastchemostat, logscale = TRUE, normmethod = 'Between')

# Do curve-registration on data
rnitsobj <- timeAlign(rnitsobj)

dipenps/rnits documentation built on March 18, 2023, 7:30 p.m.