Man pages for diptavo/MultiSKAT
Sequence Kernel Association Tests with Multiple phenotypes
| Close_SSD | Close SNP set data file (SSD) |
| Generate_SSD_SetID | Generate SNP set data file (SSD) |
| Genotype.Kernels | Kernelize the Genotype matrix for the region to be tested. |
| Get_Genotypes_SSD | Get Genotype data from SSD file |
| minP | Minimum p-value using copula |
| minPcom | Compute the p-value for ComCop test |
| MultiSKAT | Sequence kernel association test for Multiple Phenotypes |
| MultiSKAT.example.data | Example data for MultiSKAT |
| MultiSKAT.Kinship.example.data | Example data for MultiSKAT with related samples |
| MultiSKAT_NULL | Construct and get parameters and residuals from the null... |
| MultiSKAT_NULL_Kins | Construct the null MultiSKAT model with kinship adjustment |
| Open_SSD | Open SNP set data file (SSD) |
| Read_Plink_FAM | Read Plink FAM and covariates files |
| Read_SNP_WeightFile | Read a file with custom weights |
| resampling.pvalues | Get null resampling p-values |
| WSS | Weighted Sum of Squares |
