Close_SSD | Close SNP set data file (SSD) |
Generate_SSD_SetID | Generate SNP set data file (SSD) |
Genotype.Kernels | Kernelize the Genotype matrix for the region to be tested. |
Get_Genotypes_SSD | Get Genotype data from SSD file |
minP | Minimum p-value using copula |
minPcom | Compute the p-value for ComCop test |
MultiSKAT | Sequence kernel association test for Multiple Phenotypes |
MultiSKAT.example.data | Example data for MultiSKAT |
MultiSKAT.Kinship.example.data | Example data for MultiSKAT with related samples |
MultiSKAT_NULL | Construct and get parameters and residuals from the null... |
MultiSKAT_NULL_Kins | Construct the null MultiSKAT model with kinship adjustment |
Open_SSD | Open SNP set data file (SSD) |
Read_Plink_FAM | Read Plink FAM and covariates files |
Read_SNP_WeightFile | Read a file with custom weights |
resampling.pvalues | Get null resampling p-values |
WSS | Weighted Sum of Squares |
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