Read_Plink_FAM: Read Plink FAM and covariates files
In diptavo/MultiSKAT: Sequence Kernel Association Tests with Multiple phenotypes
Description
Usage
Arguments
Value
Author(s)
Description
Read Plink FAM and covariates files.
Usage
1
Read_Plink_FAM(Filename, Is.binary = TRUE, flag1 = 0)
Arguments
Filename
input file name of plink FAM file
Is.binary
if TRUE, the phenotype is binary. If phenotype is continuous, it should be
FALSE
flag1
0 represents the default coding of unaffected/affected (1/2) (default=0), and 1
represents 0/1 coding. flag1=1 is the same as -1 flag in plink. Please see the
plink manual.
Value
A dataframe of Family ID (FID), Individual ID (IID), Paternal ID (PID), Maternal ID(MID), Sex,
and Phenotype.
Author(s)
Seunggeun Lee
diptavo/MultiSKAT documentation built on May 22, 2019, 1:36 p.m.
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Description Usage Arguments Value Author(s)
Description
Read Plink FAM and covariates files.
Usage
1 | Read_Plink_FAM(Filename, Is.binary = TRUE, flag1 = 0)
|
Arguments
Filename |
input file name of plink FAM file |
Is.binary |
if TRUE, the phenotype is binary. If phenotype is continuous, it should be FALSE |
flag1 |
0 represents the default coding of unaffected/affected (1/2) (default=0), and 1 represents 0/1 coding. flag1=1 is the same as -1 flag in plink. Please see the plink manual. |
Value
A dataframe of Family ID (FID), Individual ID (IID), Paternal ID (PID), Maternal ID(MID), Sex, and Phenotype.
Author(s)
Seunggeun Lee
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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