Get_Genotypes_SSD: Get Genotype data from SSD file
In diptavo/MultiSKAT: Sequence Kernel Association Tests with Multiple phenotypes
Description
Usage
Arguments
Value
Author(s)
Description
Read a SSD file and return a genotype matrix.
Usage
1
Get_Genotypes_SSD(SSD_INFO, Set_Index, is_ID = FALSE)
Arguments
SSD_INFO
SSD_INFO object returned from Open_SSD.
Set_Index
a numeric value of Set index. The set index of each set can be found from
SetInfo object of SSD.INFO.
is_ID
a logical value indicating whether to read SNP ID (default=FALSE). If TRUE,
it reads SNP IDs and use them as column names.
Value
A genotype matrix with n rows and m columns, where n is the number of samples and m is the
number of SNPs.
Author(s)
Seunggeun Lee
diptavo/MultiSKAT documentation built on May 22, 2019, 1:36 p.m.
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Description Usage Arguments Value Author(s)
Description
Read a SSD file and return a genotype matrix.
Usage
1 | Get_Genotypes_SSD(SSD_INFO, Set_Index, is_ID = FALSE)
|
Arguments
SSD_INFO |
SSD_INFO object returned from Open_SSD. |
Set_Index |
a numeric value of Set index. The set index of each set can be found from SetInfo object of SSD.INFO. |
is_ID |
a logical value indicating whether to read SNP ID (default=FALSE). If TRUE, it reads SNP IDs and use them as column names. |
Value
A genotype matrix with n rows and m columns, where n is the number of samples and m is the number of SNPs.
Author(s)
Seunggeun Lee
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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