Xf: Model prediction function for ODE models without...

In dkaschek/dMod: Dynamic Modeling and Parameter Estimation in ODE Models

Model prediction function for ODE models without sensitivities.

Description

Interface to get an ODE into a model function x(times, pars, forcings, events) returning ODE output. It is a reduced version of Xs, missing the sensitivities.

Usage

Xf(
  odemodel,
  forcings = NULL,
  events = NULL,
  condition = NULL,
  optionsOde = list(method = "lsoda"),
  fcontrol = NULL
)

Arguments

odemodel	Object of class odemodel.
forcings	see Xs
events	see Xs
condition	either NULL (generic prediction for any condition) or a character, denoting the condition for which the function makes a prediction.
optionsOde	list with arguments to be passed to odeC() for the ODE integration.
fcontrol	list with additional fine-tuning arguments for the forcing interpolation. See approxfun for possible arguments.

Details

Can be used to integrate additional quantities, e.g. fluxes, by adding them to f. All quantities that are not initialised by pars in x(..., forcings, events) are initialized with 0. For more details and the return value see Xs.

dkaschek/dMod documentation built on April 23, 2024, 5:18 p.m.