API for dkaschek/dMod
Dynamic Modeling and Parameter Estimation in ODE Models

Global functions
%.*%	Man page
*.fn	Man page
+.datalist	Man page
+.fn	Man page
+.objfn	Man page
+.objlist	Man page
.hjbexplore	Source code
.hjbsearch	Source code
.hjexplore	Source code
.hjsearch	Source code
Id	Man page Source code
P	Man page Source code
PRD_indiv	Man page Source code
P_indiv	Man page Source code
Pexpl	Man page Source code
Pimpl	Man page Source code
PlotPaths	Source code
Xd	Man page Source code
Xf	Man page Source code
Xs	Man page Source code
Xt	Man page Source code
Y	Man page Source code
[.parframe	Man page
[.parvec	Man page
addEvent	Man page Source code
addEvent.NULL	Source code
addEvent.eventlist	Source code
addReaction	Man page Source code
appendObj	Man page Source code
appendParframes	Man page Source code
as.data.frame.datalist	Man page Source code
as.data.frame.eqnlist	Man page Source code
as.data.frame.prdlist	Man page Source code
as.datalist	Man page Source code
as.datalist.data.frame	Man page Source code
as.datalist.list	Man page Source code
as.eqnlist	Man page Source code
as.eqnlist.data.frame	Man page Source code
as.eqnvec	Man page Source code
as.eqnvec.character	Man page Source code
as.eqnvec.eqnlist	Man page Source code
as.eventlist	Man page Source code
as.eventlist.data.frame	Man page Source code
as.eventlist.list	Man page Source code
as.objlist	Man page Source code
as.parframe	Man page Source code
as.parframe.parlist	Man page Source code
as.parlist	Man page Source code
as.parvec	Man page Source code
as.parvec.numeric	Man page Source code
as.parvec.parframe	Man page Source code
as.prdlist	Man page Source code
as.prdlist.list	Man page Source code
attrs	Man page Source code
blockdiagSymb	Man page Source code
branch	Man page Source code
c.datalist	Man page Source code
c.eqnlist	Source code
c.eqnvec	Source code
c.parlist	Man page Source code
c.parvec	Man page Source code
c.prdlist	Source code
check.objfun.output	Source code Source code
check_and_sanitize_prediction	Man page Source code
checkout_hypothesis	Man page Source code
combine	Man page Source code
compare	Man page Source code
compare.character	Man page Source code
compare.data.frame	Man page Source code
compare.eqnvec	Man page Source code
compare.list	Man page Source code
compile	Man page Source code
confint.parframe	Man page Source code
conservedQuantities	Man page Source code
constraintExp2	Man page Source code
constraintL1	Source code
constraintL2	Man page Source code
controls	Man page Source code
controls.fn	Man page Source code
controls.objfn	Man page Source code
controls<-	Man page
controls<-.fn	Man page
controls<-.objfn	Man page
coordTransform	Man page Source code
covariates	Man page Source code
covariates.data.frame	Man page Source code
covariates.datalist	Man page Source code
covariates.tbl_df	Man page Source code
createExample	Man page Source code
dMod.frame	Man page Source code
datalist	Man page Source code
datapointL2	Man page Source code
datapointL2_indiv	Man page
define	Man page Source code
detectFreeCores	Man page Source code
dfoptim_hjk	Source code
dfoptim_hjkb	Source code
dfoptim_nmk	Source code
distributed_computing	Man page Source code
dot	Man page Source code
eqnlist	Man page Source code
eqnvec	Man page Source code
eventlist	Man page Source code
exmpextr	Man page Source code
expand.grid.alt	Man page Source code Source code
extractExamples	Man page Source code
fitErrorModel	Man page Source code
forcingsSymb	Man page Source code
format.eqnvec	Man page Source code
funC0	Man page Source code
getCoefficients	Man page Source code
getConditions	Man page Source code
getConditions.fn	Man page Source code
getConditions.list	Man page Source code
getConditions.tbl_df	Man page Source code
getDerivs	Man page Source code
getDerivs.list	Man page Source code
getDerivs.objlist	Man page Source code
getDerivs.parvec	Man page Source code
getDerivs.prdframe	Man page Source code
getDerivs.prdlist	Man page Source code
getElements	Man page
getEquations	Man page Source code Source code
getEquations.fn	Man page Source code
getEquations.odemodel	Man page Source code
getEquations.prdfn	Man page Source code
getEstGridParameterMapping	Man page Source code
getFluxes	Man page Source code
getLocalDLLs	Man page Source code
getObservables	Man page Source code
getObservables.tbl_df	Man page Source code
getParGrids	Man page Source code
getParameters	Man page Source code
getParameters.data.table	Man page Source code
getParameters.eqnlist	Man page Source code
getParameters.eventlist	Man page Source code
getParameters.fn	Man page Source code
getParameters.odemodel	Man page Source code
getParameters.parvec	Man page Source code
getParameters.prdframe	Man page Source code
getParameters.prdlist	Man page Source code
getParametersToEstimate	Man page Source code
getReactions	Man page Source code
getStepIndices	Man page Source code
getSteps	Man page Source code
ggopen	Man page Source code
ggplot	Source code
gridlist	Man page Source code
hjkb	Source code
import_sbml	Man page Source code
indiv_addGlobalParsToGridlist	Man page Source code
indiv_addLocalParsToGridList	Man page Source code
init_empty_objlist	Man page Source code
insert	Man page Source code
is.datalist	Man page Source code
is.eqnlist	Man page Source code
is.eqnvec	Man page Source code
is.parframe	Man page Source code
jakstat	Man page
lbind	Man page Source code
load.parlist	Man page Source code
loadDLL	Man page Source code
long2wide	Man page Source code
lscontrols_fn	Source code
lscontrols_objfn	Source code
lsdMod	Man page Source code
make_pars	Man page Source code
match.fnargs	Man page Source code
match.num	Source code
mname	Man page Source code
mname.NULL	Man page Source code
mname.character	Man page Source code
mname.fn	Man page Source code
mname.objfn	Man page Source code
modelNLME	Source code
modelSAEMIX	Source code
modelname	Man page Source code
modelname<-	Man page
modelname<-.fn	Man page
modelname<-.objfn	Man page
msParframe	Man page Source code
mstrust	Man page Source code
mutatedMod.frame	Man page Source code
names<-.datalist	Man page
nll	Man page Source code
nll_ALOQ	Man page Source code
nll_BLOQ	Man page Source code
nmkb	Source code
norm	Source code Source code
normL2	Man page Source code
normL2_indiv	Man page
nullZ	Man page Source code
objframe	Man page Source code
objlist	Man page Source code
objtimes	Man page Source code
obsfn	Man page Source code
odemodel	Man page Source code
optionsLSODA	Man page Source code
optionsLSODE	Man page Source code
optionsLSODES	Man page Source code
out_conditions	Source code
parfn	Man page Source code
parframe	Man page Source code
parlist	Man page Source code
parvec	Man page Source code
paste_	Source code
pipe2Tracefile	Source code
plot.datalist	Man page Source code
plot.parlist	Man page Source code
plot.prdframe	Man page Source code
plot.prdlist	Man page Source code
plotArray	Man page
plotCombined	Man page Source code
plotCombined.prdlist	Man page Source code
plotCombined.tbl_df	Man page Source code
plotData	Man page Source code
plotData.data.frame	Man page Source code
plotData.datalist	Man page Source code
plotData.tbl_df	Man page Source code
plotFluxes	Man page Source code
plotPars	Man page Source code
plotPars.parframe	Man page Source code
plotPars.tbl_df	Man page Source code
plotPaths	Man page Source code
plotPaths.tbl_df	Man page Source code
plotPathsMulti	Man page Source code
plotPrediction	Man page Source code
plotPrediction.prdlist	Man page Source code
plotPrediction.tbl_df	Man page Source code
plotProfile	Man page Source code
plotProfile.list	Man page Source code
plotProfile.parframe	Man page Source code
plotProfile.tbl_df	Man page Source code
plotProfilesAndPaths	Man page Source code
plotResiduals	Man page Source code
plotValues	Man page Source code
plotValues.parframe	Man page Source code
plotValues.tbl_df	Man page Source code
prdfn	Man page Source code
prdframe	Man page Source code
prdlist	Man page Source code
predict.prdfn	Man page Source code
predtimes	Man page Source code
print.datalist	Source code
print.eqnlist	Man page Source code
print.eqnvec	Man page Source code
print.objfn	Source code
print.objlist	Source code
print.obsfn	Source code
print.odemodel	Source code
print.parfn	Man page Source code
print.parvec	Man page Source code
print.prdfn	Source code
print.prdframe	Source code
print.prdlist	Source code
print0	Man page Source code
printIterations	Source code
priorL2	Man page Source code
prodfn	Man page
profile	Man page Source code
profile_pars_per_node	Man page Source code
progressBar	Man page Source code
python_version_request	Man page Source code
python_version_rpython	Man page Source code
python_version_sys	Man page Source code
reduceReplicates	Man page Source code
renameDerivPars	Man page Source code
renameDerivParsInObjlist	Man page Source code
repWithNames	Man page Source code
repar	Man page Source code
res	Man page Source code
resolveRecurrence	Man page
rref	Man page Source code
runbg	Man page Source code
runbgInstall	Man page Source code
runbg_bwfor	Man page Source code
runbg_bwfor_slurm	Man page Source code
runbg_bwfor_sshpass	Man page Source code
sanitizeConditions	Source code
sanitizeCores	Source code
sanitizeData	Source code
sanitizePars	Source code
saveShiny	Man page Source code
saveShiny_dMod.frame	Man page Source code
scale_color_dMod	Man page Source code
scale_fill_dMod	Man page Source code
stat.parlist	Man page Source code
steadyStates	Man page Source code
stepDetect	Source code
strelide	Man page Source code
strpad	Man page Source code
submatrix	Man page Source code
subset.datalist	Source code
subset.eqnlist	Man page Source code
subset.parframe	Man page Source code
sumDuplicatedParsInDeriv	Man page Source code
sumDuplicatedParsInObjlist	Man page Source code
sumdatalist	Man page
sumfn	Man page
summary.eqnvec	Man page Source code
summary.obsfn	Source code
summary.parfn	Source code
summary.parlist	Man page Source code
summary.prdfn	Source code
sumobjfn	Man page
sumobjlist	Man page
suppressAll	Source code
symmetryDetection	Man page Source code
test_conditions	Source code
theme_dMod	Man page Source code
timepointL2_indiv	Man page Source code
trust	Man page Source code
trustL1	Man page Source code
unclass_parvec	Source code
unique.parframe	Man page Source code
vcov	Man page Source code
wide2long	Man page Source code
wide2long.data.frame	Man page Source code
wide2long.list	Man page Source code
wide2long.matrix	Man page Source code
write.eqnlist	Man page Source code