API for dkeitley/scrabbitr
Single-cell RNA-seq analysis of rabbit gastrulation
| Global functions | |
|---|---|
| .calcEuclidean | Source code |
| addAttributeToGraph | Source code |
| addCellNamesToGraph | Source code |
| calcGeneSpec | Man page Source code |
| calcNhoodMean | Man page Source code |
| calcNhoodSim | Man page Source code |
| computePseudoEmbedding | Source code |
| computePseudocells | Source code |
| downsampleSCE | Man page Source code |
| exportNhoodSim | Source code |
| exportToGMT | Man page Source code |
| filterSharedFeatures | Man page Source code |
| getCelltypeColours | Source code |
| getDiscreteColours | Source code |
| getEnsemblHomologs | Man page Source code |
| getGeneMeans | Source code |
| getGenesFromGOTerms | Man page Source code |
| getMaxMappings | Source code |
| getMeanExpression | Source code |
| getNhoodPositions | Source code |
| getScranHVGs | Source code |
| getSharedUniqueMarkers | Man page Source code |
| getStageColours | Source code |
| isEnsemblID | Man page Source code |
| loadRabbitData | Source code |
| loadReadsAroundGRange | Man page Source code |
| loadTyser2020 | Man page Source code |
| loadWOTData | Man page Source code |
| loadYang2021 | Man page Source code |
| plotAnnotatedUMAP | Man page Source code |
| plotAnnotationAlluvium | Source code |
| plotGeneUMAP | Source code |
| plotNhoodMappings | Source code |
| plotNhoodMaxSim | Source code Source code |
| plotNhoodSimGroups | Man page Source code Source code |
| plotNhoodSizeHist | Source code |
| plotPseudocells | Source code |
| plotReadDistsNearGene | Man page Source code |
| plotTrajMappings | Source code |
| prepareEdgeR | Man page Source code |
| runEdgeR | Man page Source code |
| selectNhoodFeatures | Source code |
| subsetMiloGraph | Source code |
| subsetMiloGroups | Source code |
| subsetNhoods | Source code |
