filterSharedFeatures: Obtain one-to-one orthologs from Ensembl.

In dkeitley/scrabbitr: Single-cell RNA-seq analysis of rabbit gastrulation

Obtain one-to-one orthologs from Ensembl.

Description

Obtain one-to-one orthologs from Ensembl.

Usage

filterSharedFeatures(
  query_genes,
  query_species,
  one2one.data,
  outputIDs = TRUE
)

Arguments

query_genes	Genes from which to find one-to-one orthologs.
query_species	Species to find one-to-one orthologs with provided in Ensembl format (e.g. "hsapiens", "mmusculus").
one2one.data	A data.frame of results retrieved from the Ensembl BioMart database containing "_homolog_ensembl_gene" or "_homolog_associated_gene_name" fields.
outputIDs	Specifies whether to return the one-to-one orthologs in Ensembl gene ID format or using their gene names.

dkeitley/scrabbitr documentation built on Feb. 13, 2023, 4:26 p.m.