loadReadsAroundGRange: Obtains reads within a window of a given GRange
In dkeitley/scrabbitr: Single-cell RNA-seq analysis of rabbit gastrulation
View source: R/genome_annotation.R
loadReadsAroundGRange R Documentation
Obtains reads within a window of a given GRange
Description
Constrains the reads considered to within a specified window of a GRange.
Usage
loadReadsAroundGRange(bam_file, gene_range, offset = 1e+06)
Arguments
bam_file
Rsamtools BamFile object
gene_range
GRange object of gene of interest
offset
Offset from the start and end of the specified gene in which to
consider reads
dkeitley/scrabbitr documentation built on Feb. 13, 2023, 4:26 p.m.
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View source: R/genome_annotation.R
| loadReadsAroundGRange | R Documentation |
Obtains reads within a window of a given GRange
Description
Constrains the reads considered to within a specified window of a GRange.
Usage
loadReadsAroundGRange(bam_file, gene_range, offset = 1e+06)
Arguments
bam_file |
Rsamtools BamFile object |
gene_range |
GRange object of gene of interest |
offset |
Offset from the start and end of the specified gene in which to consider reads |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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