exportToGMT: Write colData to a GMT file
In dkeitley/scrabbitr: Single-cell RNA-seq analysis of rabbit gastrulation
exportToGMT R Documentation
Write colData to a GMT file
Description
Used to export cell sets for Waddington-OT analysis.
Usage
exportToGMT(sce, group, gmt_path)
Arguments
sce
SingleCellExperiment object
group
colData observation to export
gmt_path
Path to write GMT file
Details
The gmt format consists of one cell set per line. Each line is a
tab-separated list composed as follows :
The set name (can contain spaces)
A commentary / description of the set (may be empty or contain spaces)
A tab-separated list of set members
dkeitley/scrabbitr documentation built on Feb. 13, 2023, 4:26 p.m.
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| exportToGMT | R Documentation |
Write colData to a GMT file
Description
Used to export cell sets for Waddington-OT analysis.
Usage
exportToGMT(sce, group, gmt_path)
Arguments
sce |
SingleCellExperiment object |
group |
colData observation to export |
gmt_path |
Path to write GMT file |
Details
The gmt format consists of one cell set per line. Each line is a
tab-separated list composed as follows :
The set name (can contain spaces)
A commentary / description of the set (may be empty or contain spaces)
A tab-separated list of set members
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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