plot.doqtl: Plot a QTL

In dmgatti/DOQTL: Genotyping and QTL Mapping in DO Mice

Plot a QTL

Description

Given a genome scan produced by scanone, create a plot of the LOD score across all chromosomes.

Usage

  ## S3 method for class 'doqtl'
plot(x, stat.name = c("lod", "neg.log10.p"),  sig.thr = NULL, sig.col = "red", ...)

Arguments

x	DOQTL object containing the LOD score and model coefficients.
stat.name	Character string containing the name of the mapping statistic.
sig.thr	Numeric matrix containing significance thresholds. Columns must be labelled "A" and "X", in that order and should contain thresholed produced by get.sig.thr().
sig.col	Colors to use when plotting the significance thresholds above. Must be the same length as the nuber of rows in sig.thr.
...	Additional arguments to pass to plot.

Value

Creates a QTL plot.

Author(s)

Daniel Gatti

Examples

  ## Not run: 
    qtl = scanone(pheno = pheno, pheno.col = 1, probs = probs, snps = snps)
	plot(qtl)
  
## End(Not run)

dmgatti/DOQTL documentation built on April 7, 2024, 10:35 p.m.