sdp.plot: Plot association mapping results.

In dmgatti/DOQTL: Genotyping and QTL Mapping in DO Mice

Plot association mapping results.

Description

Plot the founder strain distribution patterns (SDP) of the SNPs in results.

Usage

  sdp.plot(results, ...)

Arguments

results	Data.frame containing output from assoc.map.
...	Additional arguments passed to plot.

Details

Given the output from assoc.map, plot the SDPs for the SNPs in results. This will show which strains have the minor allele at each SNP in results. You may also add this plot to the top of assoc.plot.

Value

Produces a plot. There is no return value.

Author(s)

Daniel Gatti

See Also

assoc.map, assoc.plot

Examples

  ## Not run:  
    results = assoc.map(pheno = pheno, pheno.col = 1, probs = probs, K = K, addcovar = addcovar, 
	snps = snps, chr = 1, start = 40, end = 45)
    sdp.plot(results[results[,12] > 3,])
  
## End(Not run)

dmgatti/DOQTL documentation built on April 7, 2024, 10:35 p.m.