MD.plot1: Visualize the MD plot before and after loess normalization

In dozmorovlab/HiCdiff: HiCdiff: Joint normalization and comparative analysis of multiple Hi-C datasets

Description

Visualize the MD plot before and after loess normalization

Usage

MD.plot1(M, D, mc)

Arguments

M	The M component of the MD plot. Available from the hic.table object.
D	The D component of the MD plot. The unit distance of the interaction. Available from the hic.table object.
mc	The correction factor. Calculated by hic_loess. Available from the hic.table object after running hic_loess.

Value

An MD plot.

Examples

# Create hic.table object using included Hi-C data in sparse upper
# triangular matrix format
data('HMEC.chr22')
data('NHEK.chr22')
hic.table <- create.hic.table(HMEC.chr22, NHEK.chr22, chr = 'chr22')
# Plug hic.table into hic_loess()
result <- hic_loess(hic.table)
MD.plot1(result$M, result$D, result$mc)

dozmorovlab/HiCdiff documentation built on May 20, 2019, 11:13 a.m.