dputhier/scigenex: The scigenex package (Single-Cell Informative GENe Explorer)
The scigenex package (Single-Cell Informative GENe Explorer) proposes a set of functions to (i) extract informative genes from a scRNA-seq and Visium experiment, (ii) search clusters of co-expressed genes, (iii) store/manipulate these clusters, (v) and anotate these clusters. These clusters can be mapped onto UMAP or t-SNE diagrams to functionally annotate cell populations.
Getting started
Browse package contents
Package details |
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| Author | J. Bavais, Sebastien Nin, Lionel Spinelli and Denis Puthier |
| Bioconductor views | Classification Clustering GeneRegulation ReportWriting SingleCell Transcriptomics |
| Maintainer | J. Bavais <julie.bavais@yahoo.fr> |
| License | GPL (>= 3) |
| Version | 1.4.11 |
| URL | https://github.com/dputhier/scigenex |
| Package repository | View on GitHub |
| Installation |
Install the latest version of this package by entering the following in R:
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