dputhier/scigenex: The scigenex package (Single-Cell Informative GENe Explorer)

The scigenex package (Single-Cell Informative GENe Explorer) proposes a set of functions to (i) extract informative genes from a scRNA-seq and Visium experiment, (ii) search clusters of co-expressed genes, (iii) store/manipulate these clusters, (v) and anotate these clusters. These clusters can be mapped onto UMAP or t-SNE diagrams to functionally annotate cell populations.

Getting started

Package details

AuthorJ. Bavais, Sebastien Nin, Lionel Spinelli and Denis Puthier
Bioconductor views Classification Clustering GeneRegulation ReportWriting SingleCell Transcriptomics
MaintainerJ. Bavais <julie.bavais@yahoo.fr>
LicenseGPL (>= 3)
Version1.4.11
URL https://github.com/dputhier/scigenex
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
install.packages("remotes")
remotes::install_github("dputhier/scigenex")
dputhier/scigenex documentation built on May 31, 2024, 8:59 a.m.