module_quality_scores: Compute Gene Module Quality Scores
In dputhier/scigenex: The scigenex package (Single-Cell Informative GENe Explorer)
module_quality_scores R Documentation
Compute Gene Module Quality Scores
Description
This function computes various quality metrics (connectivity, dunn index and silhouette coefficient) for gene modules in a ClusterSet object.
Usage
module_quality_scores(object)
Arguments
object
a ClusterSet object.
Value
A data frame containing the following cluster quality scores:
-
connectivity: Connectivity score.
-
dunn_index: Dunn index.
-
silhouette_coefficient: Mean silhouette coefficient.
Examples
# Load your data object
load_example_dataset('7871581/files/pbmc3k_medium_clusters')
# Compute quality scores of gene modules
quality_scores <- module_quality_scores(pbmc3k_medium_clusters)
quality_scores
dputhier/scigenex documentation built on Jan. 29, 2024, 3:40 p.m.
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| module_quality_scores | R Documentation |
Compute Gene Module Quality Scores
Description
This function computes various quality metrics (connectivity, dunn index and silhouette coefficient) for gene modules in a ClusterSet object.
Usage
module_quality_scores(object)
Arguments
object |
a ClusterSet object. |
Value
A data frame containing the following cluster quality scores:
-
connectivity: Connectivity score. -
dunn_index: Dunn index. -
silhouette_coefficient: Mean silhouette coefficient.
Examples
# Load your data object
load_example_dataset('7871581/files/pbmc3k_medium_clusters')
# Compute quality scores of gene modules
quality_scores <- module_quality_scores(pbmc3k_medium_clusters)
quality_scores
R Package Documentation
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We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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