|bam2GRanges||Import BAM file into GRanges|
|breakSeekr||Find breakpoints from deltaWs|
|createCompositeFile||Function to create composite Strand-seq file|
|GenotypeBreaks||Genotype the space between breakpoints|
|plotBreakpoints||Plotting function for BreakPointR|
|runBreakpointr||Wrapper function for breakpointR|
|runBreakpointrALL||Wrapper function for breakpointR|
|writeBedFile||Generates a bedfile from inFile|
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