GenotypeBreaks: Genotype the space between breakpoints

Description Usage Arguments Author(s)

Description

Genotype the space between breakpoints with Fisher's exact test

Usage

1
GenotypeBreaks(breaks, fragments, backG = 0.02, minReads = 10)

Arguments

breaks

A GRanges object with breakpoint coordinates.

fragments

A GRanges object with read fragments.

backG

The percent (e.g. 0.02 = 2%) of background reads allowed for WW or CC genotype calls.

minReads

The minimal number of reads between two breaks required for genotyping.

Author(s)

Ashley Sanders, David Porubsky, Aaron Taudt


drashley/InversionAnalysis_HGSVC documentation built on May 6, 2019, 8:49 a.m.