Description Usage Arguments Author(s)
Genotype the space between breakpoints with Fisher's exact test
1 | GenotypeBreaks(breaks, fragments, backG = 0.02, minReads = 10)
|
breaks |
A |
fragments |
A |
backG |
The percent (e.g. 0.02 = 2%) of background reads allowed for WW or CC genotype calls. |
minReads |
The minimal number of reads between two breaks required for genotyping. |
Ashley Sanders, David Porubsky, Aaron Taudt
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