writeBedFile: Generates a bedfile from inFile
In drashley/InversionAnalysis_HGSVC: Find breakpoints in Strand-seq data
Description
Usage
Arguments
Author(s)
Description
Write a bedfile from Breakpoint.R files for upload on to UCSC Genome browser
Usage
1
2
Arguments
fileName
is used to index the bedfile(s)
dataDirectory
is location to write bedfile(s)
fragments
A GRanges object with strand and mapq metadata, such as that generated by bam2GRanges
deltaWs
A GRanges object with metadata column "deltaW" generated by deltaWCalculator
breakTrack
A GRanges object with metadata "genoT" (e.g. newBreaks) will write a bedtrack with refined breakpoints
Author(s)
Ashley Sanders, David Porubsky, Aaron Taudt
drashley/InversionAnalysis_HGSVC documentation built on May 6, 2019, 8:49 a.m.
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Description Usage Arguments Author(s)
Description
Write a bedfile from Breakpoint.R files for upload on to UCSC Genome browser
Usage
1 2 |
Arguments
fileName |
is used to index the bedfile(s) |
dataDirectory |
is location to write bedfile(s) |
fragments |
A |
deltaWs |
A |
breakTrack |
A |
Author(s)
Ashley Sanders, David Porubsky, Aaron Taudt
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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