breakSeekr: Find breakpoints from deltaWs
In drashley/InversionAnalysis_HGSVC: Find breakpoints in Strand-seq data
Description
Usage
Arguments
Author(s)
Description
Find breakpoints from deltaWs by <here a description of how breakpoints are found>.
Usage
1
breakSeekr(deltaWs, trim = 10, peakTh = 0.33, zlim = 3.291)
Arguments
deltaWs
A GRanges object with metadata column "deltaW" generated by deltaWCalculator.
trim
Trim the upper and lower deltaWs in the dataset (e.g. 10 calculates SD of all values btwn 10th and 90th percentile).
peakTh
Determines the fraction of the upper peak to use as the threshold (e.g. 0.33 is 1/3 of max(delta)).
zlim
The degree that the value must be above the threshold to be included in the peaklist.
Author(s)
Ashley Sanders, David Porubsky, Aaron Taudt
drashley/InversionAnalysis_HGSVC documentation built on May 6, 2019, 8:49 a.m.
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Description Usage Arguments Author(s)
Description
Find breakpoints from deltaWs by <here a description of how breakpoints are found>.
Usage
1 | breakSeekr(deltaWs, trim = 10, peakTh = 0.33, zlim = 3.291)
|
Arguments
deltaWs |
A |
trim |
Trim the upper and lower deltaWs in the dataset (e.g. 10 calculates SD of all values btwn 10th and 90th percentile). |
peakTh |
Determines the fraction of the upper peak to use as the threshold (e.g. 0.33 is 1/3 of max(delta)). |
zlim |
The degree that the value must be above the threshold to be included in the peaklist. |
Author(s)
Ashley Sanders, David Porubsky, Aaron Taudt
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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