Files in drisso/zinbwave
Zero-Inflated Negative Binomial Model for RNA-Seq Data
.Rbuildignore
.github/workflows/check-bioc.yml
.gitignore
.travis.yml
DESCRIPTION
NAMESPACE
R/AllClasses.R
R/AllGenerics.R
R/detest.R
R/helper_methods.R
R/nb_Initialize.R
R/nb_Optimize.R
R/orthogonalizeTraceNorm.R
R/solveRidgeRegression.R
R/zinb_fit.R
R/zinbsurf.R
R/zinbwave.R
README.md
data/toydata.rda
inst/CITATION
inst/NEWS
man/ZinbModel-class.Rd
man/computeDevianceResiduals.Rd
man/computeObservationalWeights.Rd
man/getAlpha_mu.Rd
man/getAlpha_pi.Rd
man/getBeta_mu.Rd
man/getBeta_pi.Rd
man/getEpsilon_W.Rd
man/getEpsilon_alpha.Rd
man/getEpsilon_beta_mu.Rd
man/getEpsilon_beta_pi.Rd
man/getEpsilon_gamma_mu.Rd
man/getEpsilon_gamma_pi.Rd
man/getEpsilon_zeta.Rd
man/getGamma_mu.Rd
man/getGamma_pi.Rd
man/getLogMu.Rd
man/getLogitPi.Rd
man/getMu.Rd
man/getPhi.Rd
man/getPi.Rd
man/getTheta.Rd
man/getV_mu.Rd
man/getV_pi.Rd
man/getW.Rd
man/getX_mu.Rd
man/getX_pi.Rd
man/getZeta.Rd
man/glmWeightedF.Rd
man/imputeZeros.Rd
man/independentFiltering.Rd
man/loglik.Rd
man/nFactors.Rd
man/nFeatures.Rd
man/nParams.Rd
man/nSamples.Rd
man/orthogonalizeTraceNorm.Rd
man/penalty.Rd
man/pvalueAdjustment.Rd
man/solveRidgeRegression.Rd
man/toydata.Rd
man/zinb.loglik.Rd
man/zinb.loglik.dispersion.Rd
man/zinb.loglik.dispersion.gradient.Rd
man/zinb.loglik.matrix.Rd
man/zinb.loglik.regression.Rd
man/zinb.loglik.regression.gradient.Rd
man/zinb.regression.parseModel.Rd
man/zinbAIC.Rd
man/zinbFit.Rd
man/zinbInitialize.Rd
man/zinbModel.Rd
man/zinbOptimize.Rd
man/zinbOptimizeDispersion.Rd
man/zinbSim.Rd
man/zinbsurf.Rd
man/zinbwave.Rd
tests/testthat.R
tests/testthat/test_accessors.R
tests/testthat/test_de.R
tests/testthat/test_design.R
tests/testthat/test_initialize.R
tests/testthat/test_initialize_nb.R
tests/testthat/test_integer.R
tests/testthat/test_value.R
tests/testthat/test_zinbsurf.R
tests/testthat/test_zinbwave.R
tests/testthat/test_zinbwave_nb.R
vignettes/biblio.bib
vignettes/intro.Rmd
zinb.Rproj
