Files in drmjc/macsR
Facilitate analysis of MACS results.
.Rbuildignore
DESCRIPTION
NAMESPACE
R/CpG-data.R
R/annotate.macs.output.R
R/annotatePeakInBatch.examples.R
R/fix.macs.output.R
R/import.macs.peak.file.R
R/is.macs.fixed.R
R/macsR-package.R
R/mget.chain.R
R/mget2.R
README.md
data/CpG.human.GRCh37.rda
data/CpG.human.NCBI35.rda
data/CpG.human.NCBI36.rda
data/CpG.mouse.NCBI36.rda
data/CpG.mouse.NCBI37.rda
data/CpG.rat.RGSC3.4.rda
dev/UCSC/hg17.cpgIslandExt
dev/UCSC/hg18.cpgIslandExt
dev/UCSC/hg19.cpgIslandExt
dev/UCSC/mm8.cpgIslandExt
dev/UCSC/mm9.cpgIslandExt
dev/UCSC/rn4.cpgIslandExt
dev/make.CpG.RangedData tracks.log
inst/bin/annotate.macs.sh
inst/bin/do.macs.sh
inst/bin/fix.macs.sh
inst/examples/FoxA1.vs.input.MCF7.zip
inst/examples/MACS-2sample-50hits-fixed-annotated/FoxA1.vs.input.MCF7_diag.xls
inst/examples/MACS-2sample-50hits-fixed-annotated/FoxA1.vs.input.MCF7_model.r
inst/examples/MACS-2sample-50hits-fixed-annotated/FoxA1.vs.input.MCF7_negative_peaks.xls
inst/examples/MACS-2sample-50hits-fixed-annotated/FoxA1.vs.input.MCF7_negative_peaks_original.xls
inst/examples/MACS-2sample-50hits-fixed-annotated/FoxA1.vs.input.MCF7_peaks-FDR10.bed
inst/examples/MACS-2sample-50hits-fixed-annotated/FoxA1.vs.input.MCF7_peaks-FDR15.bed
inst/examples/MACS-2sample-50hits-fixed-annotated/FoxA1.vs.input.MCF7_peaks-FDR25.bed
inst/examples/MACS-2sample-50hits-fixed-annotated/FoxA1.vs.input.MCF7_peaks-FDR5.bed
inst/examples/MACS-2sample-50hits-fixed-annotated/FoxA1.vs.input.MCF7_peaks.bed
inst/examples/MACS-2sample-50hits-fixed-annotated/FoxA1.vs.input.MCF7_peaks.xls
inst/examples/MACS-2sample-50hits-fixed-annotated/FoxA1.vs.input.MCF7_peaks_annot.xlsx
inst/examples/MACS-2sample-50hits-fixed-annotated/FoxA1.vs.input.MCF7_peaks_original.xls
inst/examples/MACS-2sample-50hits-fixed-annotated/FoxA1.vs.input.MCF7_summits.bed
inst/examples/MACS-2sample-50hits-fixed/FoxA1.vs.input.MCF7_diag.xls
inst/examples/MACS-2sample-50hits-fixed/FoxA1.vs.input.MCF7_model.r
inst/examples/MACS-2sample-50hits-fixed/FoxA1.vs.input.MCF7_negative_peaks.xls
inst/examples/MACS-2sample-50hits-fixed/FoxA1.vs.input.MCF7_negative_peaks_original.xls
inst/examples/MACS-2sample-50hits-fixed/FoxA1.vs.input.MCF7_peaks-FDR10.bed
inst/examples/MACS-2sample-50hits-fixed/FoxA1.vs.input.MCF7_peaks-FDR15.bed
inst/examples/MACS-2sample-50hits-fixed/FoxA1.vs.input.MCF7_peaks-FDR25.bed
inst/examples/MACS-2sample-50hits-fixed/FoxA1.vs.input.MCF7_peaks-FDR5.bed
inst/examples/MACS-2sample-50hits-fixed/FoxA1.vs.input.MCF7_peaks.bed
inst/examples/MACS-2sample-50hits-fixed/FoxA1.vs.input.MCF7_peaks.xls
inst/examples/MACS-2sample-50hits-fixed/FoxA1.vs.input.MCF7_peaks_original.xls
inst/examples/MACS-2sample-50hits-fixed/FoxA1.vs.input.MCF7_summits.bed
inst/examples/MACS-2sample-50hits/FoxA1.vs.input.MCF7_diag.xls
inst/examples/MACS-2sample-50hits/FoxA1.vs.input.MCF7_model.r
inst/examples/MACS-2sample-50hits/FoxA1.vs.input.MCF7_negative_peaks.xls
inst/examples/MACS-2sample-50hits/FoxA1.vs.input.MCF7_peaks.bed
inst/examples/MACS-2sample-50hits/FoxA1.vs.input.MCF7_peaks.xls
inst/examples/MACS-2sample-50hits/FoxA1.vs.input.MCF7_summits.bed
inst/examples/macs_negative_peaks-tsv.xls
inst/examples/macs_negative_peaks-xls.xls
inst/examples/macs_peaks-tsv.xls
inst/examples/macs_peaks-xls.xls
inst/tests/test-annotate.R
inst/tests/test-fix.R
inst/tests/test-import.R
man/CpG.data.Rd
man/annotate.macs.output.Rd
man/annotatePeakInBatch.example1.Rd
man/annotatePeakInBatch.example2.Rd
man/annotatePeakInBatch.example3.Rd
man/annotatePeakInBatch.example4.Rd
man/fix.macs.output.Rd
man/import.macs.peaks.file.Rd
man/is.macs.fixed.Rd
man/macsR-package.Rd
man/mget.chain.Rd
man/mget2.Rd
tests/test-all.R
