inst/examples/MACS-2sample-50hits/FoxA1.vs.input.MCF7_model.r

In drmjc/macsR: Facilitate analysis of MACS results.

# R script for Peak Model
#  -- generated by MACS
p <- c(0.0129832146579,0.0135416324927,0.0141698525568,0.0146584681622,0.0151470837676,0.0155658971436,0.0159847105197,0.0164733261251,0.0172411506479,0.0180089751706,0.0187069974641,0.0193352175282,0.0201728442803,0.0204520531977,0.0211500754911,0.0221273067019,0.0230347356834,0.0241515713529,0.0245005824996,0.0242213735822,0.0244307802703,0.0242911758116,0.0244307802703,0.0244307802703,0.0242213735822,0.0242911758116,0.0238025602062,0.0240817691235,0.0242213735822,0.0244307802703,0.0242213735822,0.0238723624355,0.0233837468301,0.0232441423714,0.0228253289954,0.022546120078,0.0222669111606,0.0224763178486,0.0224763178486,0.0224763178486,0.0226159223073,0.0228253289954,0.0231045379127,0.0232441423714,0.0231045379127,0.0226857245367,0.0230347356834,0.0228951312247,0.02233671339,0.0224763178486,0.0221273067019,0.0217084933259,0.0212896799498,0.0206614598857,0.0204520531977,0.0199634375923,0.0196842286749,0.0196842286749,0.0194050197575,0.0198936353629,0.0199634375923,0.0200332398216,0.0209406688031,0.0205916576564,0.020731262115,0.0208708665737,0.0212896799498,0.0212896799498,0.0214990866378,0.0212198777205,0.0211500754911,0.0214292844085,0.0220575044726,0.0220575044726,0.0220575044726,0.0219877022432,0.0221273067019,0.0219877022432,0.0219877022432,0.0219877022432,0.0218480977845,0.0220575044726,0.0212896799498,0.0214990866378,0.0221273067019,0.02233671339,0.0228951312247,0.022755526766,0.0231743401421,0.0233139446008,0.0235931535181,0.0238723624355,0.0239421646649,0.0239421646649,0.0240817691235,0.0238723624355,0.0239421646649,0.0235931535181,0.0231045379127,0.0230347356834,0.0231045379127,0.0228951312247,0.0224763178486,0.0226159223073,0.022546120078,0.0226159223073,0.022755526766,0.0224065156193,0.0219179000139,0.0217782955552,0.0220575044726,0.0222669111606,0.0221971089313,0.0221273067019,0.02233671339,0.0224065156193,0.0224065156193,0.0224763178486,0.022755526766,0.022546120078,0.0221971089313,0.0220575044726,0.0217782955552,0.0220575044726,0.0214990866378,0.0214292844085,0.0208708665737,0.0203822509683,0.0206614598857,0.020731262115,0.0210802732618,0.0210802732618,0.0209406688031,0.0211500754911,0.0213594821791,0.0215688888672,0.0218480977845,0.0221273067019,0.0220575044726,0.0222669111606,0.0221971089313,0.0222669111606,0.0220575044726,0.0222669111606,0.0224065156193,0.02233671339,0.0219877022432,0.0220575044726,0.0220575044726,0.0220575044726,0.0212198777205,0.0211500754911,0.0212198777205,0.0217084933259,0.0219179000139,0.0219877022432,0.0221971089313,0.0221273067019,0.0222669111606,0.0224065156193,0.022546120078,0.0224763178486,0.0231743401421,0.0236629557475,0.0237327579768,0.0233837468301,0.0233139446008,0.0232441423714,0.0235233512888,0.0232441423714,0.0233139446008,0.0231743401421,0.0228951312247,0.0224065156193,0.0226857245367,0.022546120078,0.0228951312247,0.0231743401421,0.0237327579768,0.0236629557475,0.0238723624355,0.0240817691235,0.0241515713529,0.0244307802703,0.0240119668942,0.0245005824996,0.0252684070224,0.0252684070224,0.0254778137104,0.0247099891876,0.0244307802703,0.0244307802703,0.0242911758116,0.0246401869583,0.0245703847289,0.0242911758116,0.0246401869583,0.0250590003344,0.024989198105,0.0253382092517,0.0250590003344,0.0253382092517,0.0254080114811,0.0257570226278,0.0254778137104,0.0256174181691,0.025198604793,0.0252684070224,0.0252684070224,0.0253382092517,0.025198604793,0.0258268248571,0.0256174181691,0.0253382092517,0.0250590003344,0.0251288025637,0.025198604793,0.0252684070224,0.0253382092517,0.024989198105,0.0255476159398,0.0256872203984,0.0255476159398,0.0253382092517,0.0251288025637,0.0255476159398,0.0255476159398,0.0258268248571,0.0260362315452,0.0266644516093,0.0269436605266,0.0271530672147,0.027013462756,0.027222869444,0.0266644516093,0.0261060337745,0.0263154404625,0.0263852426919,0.0260362315452,0.0254080114811,0.0259664293158,0.0263154404625,0.0268040560679,0.0271530672147,0.027222869444,0.0275718805907,0.0277114850494,0.0270832649853,0.0272926716733,0.0277114850494,0.0277114850494,0.0281302984255,0.0283397051135,0.0282699028842,0.0284793095722,0.0284095073428,0.0282001006548,0.0278510895081,0.0279906939668,0.0285491118015,0.0287585184896,0.0285491118015,0.0287585184896,0.0291075296363,0.0295961452417,0.0288981229483,0.0284095073428,0.0286189140309,0.0286189140309,0.0280604961961,0.0288981229483,0.029456540783,0.029456540783,0.029456540783,0.0293867385537,0.0305733764525,0.0303639697645,0.0303639697645,0.0304337719938,0.0302941675351,0.0302243653058,0.0305035742232,0.0303639697645,0.0310619920579,0.0311317942872,0.0313412009753,0.0316204098927,0.031480805434,0.0310619920579,0.0311317942872,0.0309921898286,0.0319694210394,0.0324580366448,0.0333654656262,0.0329466522502,0.0333654656262,0.0339936856903,0.0344124990664,0.0348313124425,0.0350407191305,0.0343426968371,0.0344823012957,0.0350407191305,0.0349709169011,0.0349709169011,0.0353897302772,0.0348313124425,0.0352501258185,0.0357387414239,0.0362971592587,0.0367857748641,0.0367159726347,0.0371347860108,0.0379724127629,0.03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m <- 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s <- 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x <- seq.int((length(p)-1)/2*-1,(length(p)-1)/2)
pdf("FoxA1.vs.input.MCF7_model.pdf",height=6,width=6)
plot(x,p,type="l",col=c("red"),main="Peak Model",xlab="Distance to the middle",ylab="Percentage")
lines(x,m,col=c("blue"))
lines(x,s,col=c("black"))
abline(v=median(x[p==max(p)]),lty=2,col=c("red"))
abline(v=median(x[m==max(m)]),lty=2,col=c("blue"))
abline(v=median(x[s==max(s)]),lty=2,col=c("black"))
legend("topleft",c("forward tags","reverse tags","shifted tags"),lty=c(1,1,1),col=c("red","blue","black"))
legend("right",c("d=129"),bty="n")
dev.off()