Description Usage Arguments Details Value See Also Examples
View source: R/testsPostHoc-utils.R
Tests for significant differences among all pairs of populations in a chi-square test.
1 2 3 4 5 6 7 | chisqPostHoc(
chi,
popsInRows = TRUE,
control = stats::p.adjust.methods,
digits = 4,
verbose = TRUE
)
|
chi |
A |
popsInRows |
A logical indicating whether the populations form the rows (default; |
control |
A string indicating the method of control to use (see details) |
digits |
A numeric that controls the number of digits to print |
verbose |
A logical that conrols whether the warning message from the individual |
Post-hoc tests for which pairs of populations differ following a significant chi-square test can be constructed by performing all chi-square tests for all pairs of populations and then adjusting the resulting p-values for inflation due to multiple comparisons. The adjusted p-values can be computed with a wide variety of methods (see p.adjust
). This function basically works as a wrapper function that sends the unadjusted “raw” p-values from each pair-wise chi-square test to the p.adjust
function in the base R program. The p.adjust
function should be consulted for further description of the methods used.
A data.frame with a description of the pairwise comparisons, the raw p-values, and the adjusted p-values.
chisq.test
and p.adjust
.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 | # Makes a table of observations -- similar to first example in chisq.test
M <- as.table(rbind(c(76, 32, 46), c(48,23,47), c(45,34,78)))
dimnames(M) <- list(sex=c("Male","Female","Juv"),loc=c("Lower","Middle","Upper"))
M
# Fits chi-square test and shows summary
( chi1 <- chisq.test(M) )
# Shows post-hoc pairwise comparisons using fdr method
chisqPostHoc(chi1)
# Transpose the observed table to demonstrate use of popsInRows=FALSE
( chi2 <- chisq.test(t(M)) )
chisqPostHoc(chi2,popsInRows=FALSE)
# How does it handle spares columns
( obs <- matrix(c(20,0,20,30,20,20,10,0,0),nrow=3,byrow=TRUE) )
chi1 <- chisq.test(obs)
chisqPostHoc(chi1)
( obs <- matrix(c(20,0,0,30,20,20,10,0,0),nrow=3,byrow=TRUE) )
chi1 <- chisq.test(obs)
chisqPostHoc(chi1)
|
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