omitMatrix | R Documentation |
For each gene i, exclude the corresponding gene i from the global
PhyloExpressionSet or DivergenceExpressionSet and compute the TAI
or TDI
profile for the corresponding global PhyloExpressionSet or DivergenceExpressionSet
with excluded gene i.
This procedure results in a TAI or TDI profile Matrix storing the TAI or TDI profile for each omitted gene i.
omitMatrix(ExpressionSet)
ExpressionSet |
a standard PhyloExpressionSet or DivergenceExpressionSet object. |
a numeric matrix storing TAI or TDI profile for each omitted gene i.
Hajk-Georg Drost
# read standard phylotranscriptomics data
data(PhyloExpressionSetExample)
data(DivergenceExpressionSetExample)
# example PhyloExpressionSet
omMatrix_ps <- omitMatrix(PhyloExpressionSetExample)
# example DivergenceExpressionSet
omMatrix_ds <- omitMatrix(DivergenceExpressionSetExample)
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