omitMatrix: Compute TAI or TDI Profiles Omitting a Given Gene
In drostlab/myTAI: Evolutionary Transcriptomics
omitMatrix R Documentation
Compute TAI or TDI Profiles Omitting a Given Gene
Description
For each gene i, exclude the corresponding gene i from the global
PhyloExpressionSet or DivergenceExpressionSet and compute the TAI or TDI
profile for the corresponding global PhyloExpressionSet or DivergenceExpressionSet
with excluded gene i.
This procedure results in a TAI or TDI profile Matrix storing the TAI or TDI profile for each omitted gene i.
Usage
omitMatrix(ExpressionSet)
Arguments
ExpressionSet
a standard PhyloExpressionSet or DivergenceExpressionSet object.
Value
a numeric matrix storing TAI or TDI profile for each omitted gene i.
Author(s)
Hajk-Georg Drost
Examples
# read standard phylotranscriptomics data
data(PhyloExpressionSetExample)
data(DivergenceExpressionSetExample)
# example PhyloExpressionSet
omMatrix_ps <- omitMatrix(PhyloExpressionSetExample)
# example DivergenceExpressionSet
omMatrix_ds <- omitMatrix(DivergenceExpressionSetExample)
drostlab/myTAI documentation built on April 8, 2024, 8:24 a.m.
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| omitMatrix | R Documentation |
Compute TAI or TDI Profiles Omitting a Given Gene
Description
For each gene i, exclude the corresponding gene i from the global
PhyloExpressionSet or DivergenceExpressionSet and compute the TAI or TDI
profile for the corresponding global PhyloExpressionSet or DivergenceExpressionSet
with excluded gene i.
This procedure results in a TAI or TDI profile Matrix storing the TAI or TDI profile for each omitted gene i.
Usage
omitMatrix(ExpressionSet)
Arguments
ExpressionSet |
a standard PhyloExpressionSet or DivergenceExpressionSet object. |
Value
a numeric matrix storing TAI or TDI profile for each omitted gene i.
Author(s)
Hajk-Georg Drost
Examples
# read standard phylotranscriptomics data
data(PhyloExpressionSetExample)
data(DivergenceExpressionSetExample)
# example PhyloExpressionSet
omMatrix_ps <- omitMatrix(PhyloExpressionSetExample)
# example DivergenceExpressionSet
omMatrix_ds <- omitMatrix(DivergenceExpressionSetExample)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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