View source: R/plot_distribution_expression.R
plot_distribution_expression | R Documentation |
plot_distribution_partialTAI generates two plots that help to compare the distribution of expression levels through various developmental stages, highlighting each stage with distinct colors.
plot_distribution_expression(
ExpressionSet,
stages = 1:(ncol(ExpressionSet) - 2),
xlab = "Expression",
ylab = "Density",
main = "Density Distribution of Expression by Developmental Stage",
seed = 123
)
ExpressionSet |
a standard PhyloExpressionSet or DivergenceExpressionSet object. |
stages |
a numeric vector specifying the indices of the stages to compare. Each index corresponds to a stage in the ExpressionSet. Starts in one. |
xlab |
label of x-axis. |
ylab |
label of y-axis. |
main |
figure title. |
seed |
defines the colors for the different developmental stages |
Recommendation - Apply a square root transformation to enhance the visualization of differences
in the distributions: plot_distribution_partialTAI(tf(ExpressionSet, sqrt))
Filipa Martins Costa
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