mkCSV: Create a CSV or XLSX file from the extracted results from...

In dsidavis/SpilloverDA: Munging and Exploring the Viral Spillover Data Set

Description

Takes the results from extracting keywords from the text, and writes then into a CSV or XLSX file to be reviewed.

Usage

mkCSV(eco, xlsxFile = character(),
      obs = grep(gsub("rds", "", basename(f)), species$PDF, fixed = TRUE),
      species = NULL, # the data.frame from Species.csv
      spVar = c("Country", "State", "City", "Location", "Region"),
      spFixed = c("reference_ID", "PDF"),
      jvar = getLocation,
      write = TRUE,
      jdata = jvar(eco))
     

Arguments

eco	a data frame with each row corresponding to a term extracted from the PDF document.
xlsxFile	the file name to which the results are written as an XLSX file.
obs	The rows in the Species.csv which correspond to the document in
species	the data.frame of Species.csv
spVar	the variables in Species.csv which are of interest in the comparison CSV or XLSX.
spFixed	the fixed variables, i.e, the reference variables which identify the rows of Species.csv.
jvar	the function to call to extract the items from the ecoextract results
write	logical, whether to write the extracted terms to a file
jdata	the extracted data items from the ecoextract results

Author(s)

Duncan Temple Lang

dsidavis/SpilloverDA documentation built on June 1, 2019, 2:55 p.m.