calculate_CDI: Calculate Clustering Deviation Index (CDI)

In duohongrui/simutils: Common functions used in data simulation and evaluation

Calculate Clustering Deviation Index (CDI)

Description

Calculate Clustering Deviation Index (CDI)

Usage

calculate_CDI(data, cluster_info, batch_info = NULL)

Arguments

data	A matrix of gene expression profile.
cluster_info	Cluster(or group) assignment of every cells in columns of matrix.
batch_info	Default is NULL. Batch information of every cells.

Value

A dataframe of CDI values

References

Fang J, Chan C, Owzar K, et al. Clustering Deviation Index (CDI): A robust and accurate unsupervised measure for evaluating scRNA-seq data clustering. bioRxiv, 2022. https://doi.org/10.1101/2022.01.03.474840 Github URL: https://github.com/jichunxie/CDI

duohongrui/simutils documentation built on March 12, 2024, 8:40 p.m.