calculate_ROGUE: Calculate ROUGE Value Calculate entropy-based metric for...
In duohongrui/simutils: Common functions used in data simulation and evaluation
View source: R/calculate_cluster_properties.R
calculate_ROGUE R Documentation
Calculate ROUGE Value
Calculate entropy-based metric for assessing the purity of single cell populations.
Description
Calculate ROUGE Value
Calculate entropy-based metric for assessing the purity of single cell populations.
Usage
calculate_ROGUE(data, cluster_info)
Arguments
data
A matrix of gene expression profile.
cluster_info
Cluster(or group) assignment of every cells in columns of matrix.
Value
A numeric ranged from 0 to 1.
References
Liu B, Li C, Li Z, et al. An entropy-based metric for assessing the purity of single cell populations. Nature communications, 2020, 11(1): 1-13. https://doi.org/10.1038/s41467-020-16904-3
Github URL: https://github.com/PaulingLiu/ROGUE
duohongrui/simutils documentation built on March 12, 2024, 8:40 p.m.
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View source: R/calculate_cluster_properties.R
| calculate_ROGUE | R Documentation |
Calculate ROUGE Value Calculate entropy-based metric for assessing the purity of single cell populations.
Description
Calculate ROUGE Value Calculate entropy-based metric for assessing the purity of single cell populations.
Usage
calculate_ROGUE(data, cluster_info)
Arguments
data |
A matrix of gene expression profile. |
cluster_info |
Cluster(or group) assignment of every cells in columns of matrix. |
Value
A numeric ranged from 0 to 1.
References
Liu B, Li C, Li Z, et al. An entropy-based metric for assessing the purity of single cell populations. Nature communications, 2020, 11(1): 1-13. https://doi.org/10.1038/s41467-020-16904-3 Github URL: https://github.com/PaulingLiu/ROGUE
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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