calculate_trajectory_properties: Calculate Metrics for Comparison of Two Trajectories

In duohongrui/simutils: Common functions used in data simulation and evaluation

Calculate Metrics for Comparison of Two Trajectories

Description

Calculate Metrics for Comparison of Two Trajectories

Usage

calculate_trajectory_properties(
  ref_data,
  ref_data_grouping = NULL,
  sim_data,
  sim_data_grouping = NULL,
  algorithm = "Hungarian",
  seed = 1,
  verbose = TRUE
)

Arguments

ref_data	A gene matrix or the trajectory object generated by dynwrap::wrap_expression from real data
ref_data_grouping	The labels of cells in real data
sim_data	A gene matrix or the trajectory object generated by dynwrap::wrap_expression from simulated data
sim_data_grouping	The labels of cells in simulated data
algorithm	Optional. Which algorithm used for matching cells in simulated and real data. Improved_Hungarian (default), Hungarian.
seed	Random seed
verbose	Whether the messages are returned to users when processing

Value

A list

duohongrui/simutils documentation built on March 12, 2024, 8:40 p.m.