lod_drop_rng: Find Haplotype Region with LOD scores within QTL Peak Drop

Description Usage Arguments

Description

This function finds the haplotype region with LOD scores within the QTL peak drop.

Usage

1
lod_drop_rng(markers, scan1_output, max_chr, max_peak, hilit_drop)

Arguments

markers

A dataframe of marker positions.

scan1_output

Output of scan1().

max_chr

Character value of the haplotype's QTL peak chromosome. This can be obtained from max_scan1() 'chr' column.

max_peak

Numeric value of the haplotype's QTL peak LOD score. This can be obtained from max_scan1() third column.

hilit_drop

Positions with LOD scores within this amount of the QTL peak will be returned.


duytpm16/qtl2utils documentation built on May 13, 2019, 6:08 p.m.