plot_snpasso_and_genes2: Two-panel plot with both SNP association and genes

In duytpm16/qtl2utils: Modification of QTL2 Plots

Description

Modified version of qtl2's internal plot_snpasso_and_genes function that is called by plot_snpasso2. See plot_snpasso2 and plot_genes2 for parameter info.

Usage

plot_snpasso_and_genes2(scan1output, snpinfo, max_peak, haplo_peak_drop = NULL, haplo_scan = NULL, show_all_snps=TRUE,
                        drop_hilit=NA, col_hilit="violetred", col="darkslateblue",
                        gap=25, minlod=0,
                        genes, minrow=4, padding=0.2,
                        colors=c("black", "red3", "green4", "blue3", "darkorange2"),
                        scale_pos=1, start_field="start", stop_field="stop",
                        strand_field="strand", name_field="Name",
                        top_panel_prop=0.65, xlim=NULL, xaxt="s",
                        xlab=NULL, main="", sub="", ...)

duytpm16/qtl2utils documentation built on May 13, 2019, 6:08 p.m.