plot_int: Plot the additive, interactive, and difference genome scan

Description Usage Arguments Hidden graphics parameters

Description

Utilizes plot_scan1() to plot three LOD curves (additive, interactive, and difference) for a genome scan.

Usage

1
plot_int(add_scan, int_scan, diff_scan, map, lodcolumn = 1, chr = NULL)

Arguments

add_scan

Output of scan1() without interactive covariates.

int_scan

Output of scan1() with interactive covariates.

diff_scan

Scan1 matrix containing the difference in LOD scores between the int_scan and add_scan.

map

A list of vectors of marker positions, as produced by insert_pseudomarkers().

lodcolumn

LOD score column to plot (a numeric index, or a character string for a column name). Only one value allowed.

chr

Selected chromosomes to plot; a vector of character strings.

Hidden graphics parameters

No hidden graphics parameters.


duytpm16/qtl2utils documentation built on May 13, 2019, 6:08 p.m.